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SCNpilot_P_inoc_Rhizobiales_67_4_fragment_2

SCNpilot_P_inoc_Rhizobiales_67_4
In projects: SCNpilot_P_inoc

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.15 Longest contig: 15.38 Kbp Bin length: 1.36 Mbp GC content: 67.16 %
Contigs count: 236 Features count: 1512 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 38 / 55 MC: 1 BSCG 35 / 51 MC: 1 ASCG 4 / 38
Displaying items 101-150 of 236 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_9726 7 4788 bp 61.26 2.44 73.00
scnpilot_p_inoc_scaffold_5155
Order: Rhizobiales (71.43%)
7 7440 bp 68.13 4.86 93.75
scnpilot_p_inoc_scaffold_16839
Order: Rhizobiales (57.14%)
7 5063 bp 66.30 3.79 93.50
scnpilot_p_inoc_scaffold_8172
Genus: Mesorhizobium (85.71%)
7 5399 bp 64.73 3.72 90.52
scnpilot_p_inoc_scaffold_11012
Class: Alphaproteobacteria (71.43%)
7 4380 bp 65.68 4.49 84.79
scnpilot_p_inoc_scaffold_15154
Class: Alphaproteobacteria (50%)
6 4112 bp 67.78 4.74 92.58
scnpilot_p_inoc_scaffold_8976
Order: Rhizobiales (50%)
6 5069 bp 67.19 3.70 89.84
scnpilot_p_inoc_scaffold_8721
Order: Rhizobiales (66.67%)
6 5167 bp 69.91 4.56 99.17
scnpilot_p_inoc_scaffold_6587
Order: Rhizobiales (50%)
6 6270 bp 59.57 2.70 92.78
scnpilot_p_inoc_scaffold_9037
Order: Rhizobiales (66.67%)
6 5045 bp 68.01 4.25 79.56
scnpilot_p_inoc_scaffold_12105
Species: Devosia geojensis (50%)
6 4098 bp 67.96 3.15 99.05
scnpilot_p_inoc_scaffold_6605
Species: Devosia psychrophila (66.67%)
6 6262 bp 66.91 3.47 89.06
scnpilot_p_inoc_scaffold_6613
Species: Rhizobium leguminosarum (66.67%)
6 6259 bp 68.81 4.27 98.35
scnpilot_p_inoc_scaffold_5490
Class: Alphaproteobacteria (50%)
6 7139 bp 67.84 3.91 89.47
scnpilot_p_inoc_scaffold_6884
Class: Alphaproteobacteria (83.33%)
6 6089 bp 68.32 4.09 87.90
scnpilot_p_inoc_scaffold_10810
Order: Rhizobiales (83.33%)
6 4440 bp 68.47 4.16 97.57
scnpilot_p_inoc_scaffold_11913
Genus: Mesorhizobium (50%)
6 4142 bp 69.22 4.35 98.72
scnpilot_p_inoc_scaffold_9638
Order: Rhizobiales (50%)
6 4820 bp 63.96 3.45 89.81
scnpilot_p_inoc_scaffold_5821
Order: Rhizobiales (50%)
6 6848 bp 66.22 4.05 91.03
scnpilot_p_inoc_scaffold_4774
Order: Rhizobiales (66.67%)
6 7841 bp 67.07 4.50 90.26
scnpilot_p_inoc_scaffold_7130
Order: Rhizobiales (50%)
6 5947 bp 64.81 3.63 79.50
scnpilot_p_inoc_scaffold_11696
Class: Alphaproteobacteria (50%)
6 4194 bp 68.22 4.36 88.63
scnpilot_p_inoc_scaffold_9162
Order: Rhizobiales (50%)
6 4990 bp 70.32 4.48 95.29
scnpilot_p_inoc_scaffold_6982
Order: Rhizobiales (83.33%)
6 6031 bp 69.44 4.15 96.10
scnpilot_p_inoc_scaffold_9429
Order: Rhizobiales (50%)
6 4886 bp 71.14 4.21 96.95
scnpilot_p_inoc_scaffold_11457
Species: Azorhizobium caulinodans (66.67%)
6 4951 bp 67.36 3.97 88.29
scnpilot_p_inoc_scaffold_10634
Order: Rhizobiales (50%)
6 4497 bp 67.02 3.04 88.53
scnpilot_p_inoc_scaffold_10127
Species: Bosea sp. LC85 (100%)
6 4657 bp 69.01 3.77 95.40
scnpilot_p_inoc_scaffold_10640
Genus: Rhizobium (50%)
6 4495 bp 66.50 4.81 92.84
scnpilot_p_inoc_scaffold_10897
Order: Rhizobiales (66.67%)
6 4414 bp 66.65 3.98 73.81
scnpilot_p_inoc_scaffold_9457
Order: Rhizobiales (66.67%)
6 6296 bp 66.25 3.60 92.44
scnpilot_p_inoc_scaffold_7703
Genus: Devosia (50%)
6 5651 bp 67.53 3.85 84.36
scnpilot_p_inoc_scaffold_5917
Domain: Bacteria (83.33%)
6 6765 bp 67.01 4.48 96.54
scnpilot_p_inoc_scaffold_7987
Genus: Mesorhizobium (50%)
6 5497 bp 67.09 4.78 86.67
scnpilot_p_inoc_scaffold_6552
Class: Alphaproteobacteria (66.67%)
6 6293 bp 70.27 3.69 96.06
scnpilot_p_inoc_scaffold_7242
Order: Rhizobiales (66.67%)
6 5886 bp 69.28 3.90 93.07
scnpilot_p_inoc_scaffold_9521
Class: Alphaproteobacteria (60%)
5 4858 bp 67.02 4.23 94.42
scnpilot_p_inoc_scaffold_9523
Domain: Bacteria (100%)
5 4858 bp 68.34 3.64 99.98
scnpilot_p_inoc_scaffold_8210
Order: Rhizobiales (80%)
5 5385 bp 67.08 4.18 96.60
scnpilot_p_inoc_scaffold_7018
Class: Alphaproteobacteria (80%)
5 6009 bp 66.15 4.62 85.42
scnpilot_p_inoc_scaffold_11832
Order: Rhizobiales (60%)
5 4163 bp 68.65 4.72 84.60
scnpilot_p_inoc_scaffold_8232
Class: Alphaproteobacteria (60%)
5 5373 bp 67.49 4.13 89.61
scnpilot_p_inoc_scaffold_12116
Order: Rhizobiales (60%)
5 4095 bp 64.44 3.11 81.69
scnpilot_p_inoc_scaffold_11591
Order: Rhizobiales (60%)
5 4218 bp 67.52 3.95 88.69
scnpilot_p_inoc_scaffold_5235
Order: Rhizobiales (60%)
5 7363 bp 69.10 3.97 95.26
scnpilot_p_inoc_scaffold_10778
Genus: Novosphingobium (60%)
5 4447 bp 65.46 3.78 85.27
scnpilot_p_inoc_scaffold_15212
Phylum: Proteobacteria (60%)
5 4116 bp 69.68 4.41 94.24
scnpilot_p_inoc_scaffold_11868
Order: Rhizobiales (60%)
5 4152 bp 65.34 4.34 94.00
scnpilot_p_inoc_scaffold_8261
Order: Rhizobiales (80%)
5 5363 bp 67.89 4.89 95.49
scnpilot_p_inoc_scaffold_16940
Class: Alphaproteobacteria (80%)
5 4036 bp 67.57 3.83 79.91
Displaying items 101-150 of 236 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.