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scnpilot_p_inoc_scaffold_5446_7

Organism: SCNpilot_P_inoc_Devosia_62_4

partial RP 38 / 55 BSCG 38 / 51 ASCG 9 / 38
Location: comp(6652..7179)

Top 3 Functional Annotations

Value Algorithm Source
O-antigen polymerase n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PRD4_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 45.6
  • Coverage: 180.0
  • Bit_score: 158
  • Evalue 4.90e-36
O-antigen polymerase {ECO:0000313|EMBL:CCM79161.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source= similarity UNIPROT
DB: UniProtKB
  • Identity: 45.6
  • Coverage: 180.0
  • Bit_score: 158
  • Evalue 6.90e-36
lipid A core-O-antigen ligase-like enyme similarity KEGG
DB: KEGG
  • Identity: 46.5
  • Coverage: 170.0
  • Bit_score: 156
  • Evalue 8.90e-36

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Taxonomy

Rhizobium mesoamericanum → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 528
CTGGCCGTCAATCTCGGCGCCCTGGGCGCGACGTTCAGCCCGCAGGTCAGCGCCTTGATCGAGAGCCTTGGCATCGACCCGACCTTTACCGGCCGTGTCGATATCTGGCGCTTGGCCTATGACGCCATCGCGCATAGGCCCATCACGGGGTACGGGTTCACCCTGTTCTGGACCACCGGGCAGGCGGATATGGTGATGCCCGATGTCGAAACCTGGGCCACCACGGCGTCGGACACGCATAACAGCTATCTTTCGGTCATCCTCGACGGTGGCTTTCCGGCGCTGATCCTGATCCTGATCTGGCTGGTGGTGTTGCCGCTGCGCGATATCAATGCCAGTCGCGCGCCAGGGCCGGGTTGGGAGCTCAATCTGCTGTTCCGACGCATCTGGATGTTCGGCATTCTCCTTGCCAGCATGGAAAGCATTTTTCTCGCTATCAATGGGCCGGTCTGGTTCTCGCTTCTGATGGCGACGTACGGACTGAGGCTCTCGCGCATCTCCTATCTGACCGCACGCCATTCATCCTGA
PROTEIN sequence
Length: 176
LAVNLGALGATFSPQVSALIESLGIDPTFTGRVDIWRLAYDAIAHRPITGYGFTLFWTTGQADMVMPDVETWATTASDTHNSYLSVILDGGFPALILILIWLVVLPLRDINASRAPGPGWELNLLFRRIWMFGILLASMESIFLAINGPVWFSLLMATYGLRLSRISYLTARHSS*