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scnpilot_p_inoc_scaffold_1373_10

Organism: SCNpilot_P_inoc_Sphingobacteriales_44_4_partial

near complete RP 42 / 55 MC: 2 BSCG 41 / 51 MC: 2 ASCG 9 / 38 MC: 1
Location: comp(16692..17285)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niabella soli DSM 19437 RepID=H1NL78_9SPHI similarity UNIREF
DB: UNIREF100
  • Identity: 50.3
  • Coverage: 171.0
  • Bit_score: 163
  • Evalue 2.90e-37
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:GAO42771.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 44.4
  • Coverage: 180.0
  • Bit_score: 168
  • Evalue 7.50e-39
hypothetical protein similarity KEGG
DB: KEGG
  • Identity: 50.3
  • Coverage: 171.0
  • Bit_score: 163
  • Evalue 8.20e-38

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Taxonomy

Flavihumibacter petaseus → Flavihumibacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 594
ATGATTGACGCCAATCTTCATACCATATGCCAGAAAATAACAAAAGGCGACGATCAGGGAGCTTTTGGCGAACTCTTTTCTCTGTTGTATCCGAAGCTTTTACCTTTTGCGGTTTCCATTCTCAATAGCCGCGAATCAGGAGAAGAAGTAGTGGAAGATGTTTTTGTGAAACTTTGGCAAAACAGGAAAATGTTAGATGCCATTAAAAATATCAAGTATTACCTGTTGGTTGCGGTGAAACATACGTCTCTTGACTACCTTAACAGAGAAAAGAAAACACAACATGAAAGCCTTGAAAATATTGATTTAGAGTTTGGAGATTTTGAGCTGAACCCTGAGAACGCGCTGATTTCAAGAGAAAACATAGTTGCAATTCAAAAAGAGATCGAATCCCTTCCCAACAGATGTAAATTAATTTTCCGCCTTGTAAAGGAAAATGGACTGAAATACAAAGAAGTGGGTGAGTTGCTCAATATAAGTACAAAAACTGTTGAAACTCAAATGACGATTGCCCTAAGCCGGATAGGGTCTGCCTTAAGAAAACAACTTGCCGCAGAAGGTACCACCGATTTAAAAAAGTTAAAAGAAGGGTAG
PROTEIN sequence
Length: 198
MIDANLHTICQKITKGDDQGAFGELFSLLYPKLLPFAVSILNSRESGEEVVEDVFVKLWQNRKMLDAIKNIKYYLLVAVKHTSLDYLNREKKTQHESLENIDLEFGDFELNPENALISRENIVAIQKEIESLPNRCKLIFRLVKENGLKYKEVGELLNISTKTVETQMTIALSRIGSALRKQLAAEGTTDLKKLKEG*