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scnpilot_p_inoc_scaffold_1825_2

Organism: SCNpilot_P_inoc_Sphingobacteriales_44_4_partial

near complete RP 42 / 55 MC: 2 BSCG 41 / 51 MC: 2 ASCG 9 / 38 MC: 1
Location: comp(1416..2000)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8D8_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 41.7
  • Coverage: 192.0
  • Bit_score: 153
  • Evalue 2.30e-34
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 41.7
  • Coverage: 192.0
  • Bit_score: 153
  • Evalue 6.40e-35
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEV99108.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" sourc similarity UNIPROT
DB: UniProtKB
  • Identity: 41.7
  • Coverage: 192.0
  • Bit_score: 153
  • Evalue 3.20e-34

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Taxonomy

Niastella koreensis → Niastella → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 585
ATGCTTGCAAACAGAGAACAGGAATTGCTGCTGGAGATCGCATCAGGAAGTGAACCTGCATTCAGGGAATTGTTCCAGGCCTATCGCAGGAAACTGTTCACTTATATTTTTAAAACAACGTCATCAAGGGAAATTGCTGAAGATACCGTCCAGGAGATTTTCCTGAAGCTTTGGTCTGTCCGCAAAACCCTGCCCGCTATTGGTAATATGAATGCTTACCTGCACCGGATGGCGCATAATTATGCTTACCAGGGGTTCCGGCGGCTGGCAAAAGAAACATTGCTCCTGGATCATCTGAGCAAGCAGGAAGAGGGCTACACGCGCAGCCCGGTACAGGAGTTACAGTCGAAGGAAGTAGCAGCCTATATTCAAGGCCTCGTTGACCGGCTCACCCCCCAGCAACGCAAAGTCTTCCTCCTGAGCCGGGAGGACGGTTTGAAACAGGAAGAAATTGCCAGTCGGCTCAATATTTCTATCTCCACAGTTAAAAAACATATGGTTGACGCCCTGGCTTTTCTCCGGGAAGAGATCCGGCAGAACTATAGCCTGTATGCAACTGCGCTGATTGTTGTGCATCAGCTATGA
PROTEIN sequence
Length: 195
MLANREQELLLEIASGSEPAFRELFQAYRRKLFTYIFKTTSSREIAEDTVQEIFLKLWSVRKTLPAIGNMNAYLHRMAHNYAYQGFRRLAKETLLLDHLSKQEEGYTRSPVQELQSKEVAAYIQGLVDRLTPQQRKVFLLSREDGLKQEEIASRLNISISTVKKHMVDALAFLREEIRQNYSLYATALIVVHQL*