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scnpilot_p_inoc_scaffold_553_29

Organism: SCNpilot_P_inoc_Myxococcales_68_7

near complete RP 53 / 55 MC: 4 BSCG 51 / 51 MC: 7 ASCG 14 / 38 MC: 1
Location: 32756..33355

Top 3 Functional Annotations

Value Algorithm Source
Collagen triple helix repeat family protein n=1 Tax=Haemophilus parasuis SW140 RepID=U4STY8_HAEPR similarity UNIREF
DB: UNIREF100
  • Identity: 44.6
  • Coverage: 101.0
  • Bit_score: 79
  • Evalue 4.30e-12
Collagen triple helix repeat family protein {ECO:0000313|EMBL:EQA14006.1}; TaxID=1275973 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus.;" source= similarity UNIPROT
DB: UniProtKB
  • Identity: 44.6
  • Coverage: 101.0
  • Bit_score: 79
  • Evalue 6.00e-12
hypothetical protein similarity KEGG
DB: KEGG
  • Identity: 45.2
  • Coverage: 93.0
  • Bit_score: 74
  • Evalue 5.10e-11

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Taxonomy

[Haemophilus] parasuis → Haemophilus → Pasteurellales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 600
ATGACCGCAACGGTCTCGCTCCGGCGTCACGCTCCAGCGGAGCGCCCCCGCCGGACGCGTCCACGCTCACTGCATCACGAATGGGTGAGCCATCACCTGACGGGGCCATGGTCCGATGGCGAATGCCGAGAGGTGGCAGAGCAGAGCGGAACGAACACGATCGGGAGTCGCCAATACACCAGCGATGGATCAATTCATGCGTCGACGGTGATGGTGAGAACGAAACGTTCGTCGAATCTTGCTTTCCTGGTCGGTGTCACGGTCGGCGGCGCCGTGGCCACTGCTGTGACGCGTCTCACCGCAGGCGCCAAACGCCGCATGCGGCCAGGTCGCTCTTCTACCGAAAGCGCGGCTTCGCTCGAGGTCTACGGTCCGGCGAGCGCTACGCCGCCCGGCCCATCCGTCACGCAGGGTATCCAAGGGCCTCGAGGGCCGGCCGGTCCGATGGGAGCTCGCGGTCCAGCCGGTCCCCAGGGAGCGCGCGGCCCGCAAGGCGCCGCCGGAGCGCAGGGACCGCAGGGACCGCAGGGCGCGGGAGCGTCCAGCGGGCCCCTCGAGAGCGAAATCGGTGAGTACGCTTCGAACAGGCAGCGGTGGTAG
PROTEIN sequence
Length: 200
MTATVSLRRHAPAERPRRTRPRSLHHEWVSHHLTGPWSDGECREVAEQSGTNTIGSRQYTSDGSIHASTVMVRTKRSSNLAFLVGVTVGGAVATAVTRLTAGAKRRMRPGRSSTESAASLEVYGPASATPPGPSVTQGIQGPRGPAGPMGARGPAGPQGARGPQGAAGAQGPQGPQGAGASSGPLESEIGEYASNRQRW*