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scnpilot_p_inoc_scaffold_560_48

Organism: SCNpilot_P_inoc_Myxococcales_68_7

near complete RP 53 / 55 MC: 4 BSCG 51 / 51 MC: 7 ASCG 14 / 38 MC: 1
Location: comp(58450..59115)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1D6V0_MYXXD similarity UNIREF
DB: UNIREF100
  • Identity: 56.5
  • Coverage: 207.0
  • Bit_score: 228
  • Evalue 4.90e-57
ECF subfamily RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 56.5
  • Coverage: 207.0
  • Bit_score: 228
  • Evalue 1.40e-57
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=246197 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="M similarity UNIPROT
DB: UniProtKB
  • Identity: 56.5
  • Coverage: 207.0
  • Bit_score: 228
  • Evalue 6.80e-57

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Taxonomy

Myxococcus xanthus → Myxococcus → Myxococcales → Deltaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 666
ATGTGCACGGCCAAGATGCGTGAGCCCTCGAACCGCGCCGTGTCGGTCGCGACCGAGACGGGAGCGACGGAAGCGACGGACGCTACGCGACCGCTCGATACCGACGTGAAGCAGCTGCTCGTCGAGAACCATCGCGCGTTCCTTCGCTTCCTCGAGCAACGTGTCGGTCGTCGGGATCTCGCCGAAGACATCCTCCAGGAGGCCTTTGCCCGTGGACTCGACAAGCTCGAGGGGCTGCGAGACGGCGAGGCGGTGATCCCGTGGTTCTACCGGACGCTTCGCAACGCGACCATCGACTACTACCGTCGAACGAAGGTGGCGGGTCGGGCGCTCGCGCAGTTCGCCGAGGAGATCGAGACCGCCGAAGAGCCGGTCGAGATGGTGCGGGCGGAGGTCTGCTCGTGCGTGCTCCGCCTGGCCGGTACGCTCAAGCCCGAATACGCGGACGCGCTCCGGCGCGTCGAAGTCGACGGCGTCTCGATGCGGACGTTCGCCGAAGAGCGAGGCATCTCGAAGAGCAACGCGGCGGTTCGCGTCTTCCGGGCGAGGGAGGCGCTCCGCCGTCAGCTCGCCGTGTCATGCGGAACGTGCGCGGAGCACGGGTGTGTCTCGTGCACGTGTGCAATGCGCGACGATGGCGCCGGGCAGTGCGCGCCGGTGGTGTAA
PROTEIN sequence
Length: 222
MCTAKMREPSNRAVSVATETGATEATDATRPLDTDVKQLLVENHRAFLRFLEQRVGRRDLAEDILQEAFARGLDKLEGLRDGEAVIPWFYRTLRNATIDYYRRTKVAGRALAQFAEEIETAEEPVEMVRAEVCSCVLRLAGTLKPEYADALRRVEVDGVSMRTFAEERGISKSNAAVRVFRAREALRRQLAVSCGTCAEHGCVSCTCAMRDDGAGQCAPVV*