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scnpilot_p_inoc_scaffold_1361_5

Organism: SCNpilot_P_inoc_Myxococcales_68_7

near complete RP 53 / 55 MC: 4 BSCG 51 / 51 MC: 7 ASCG 14 / 38 MC: 1
Location: comp(3562..4173)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GGY8_9DELT similarity UNIREF
DB: UNIREF100
  • Identity: 45.6
  • Coverage: 171.0
  • Bit_score: 144
  • Evalue 8.50e-32
RNA polymerase sigma factor RpoE {ECO:0000313|EMBL:EYF04891.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source= similarity UNIPROT
DB: UniProtKB
  • Identity: 49.7
  • Coverage: 163.0
  • Bit_score: 149
  • Evalue 4.80e-33
ECF family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 32.2
  • Coverage: 177.0
  • Bit_score: 88
  • Evalue 2.00e-15

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Taxonomy

Chondromyces apiculatus → Chondromyces → Myxococcales → Deltaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 612
ATGGTCTCCGTCCCCATCGACGAGCTCGACCGTATGCAGGTCGAGCCGAGCGCGCATGCCCTTGTCATGAAGAATCTTCGGGCGGACGTGTCTTCAACTGACGAGTGGCCTCTCCGAGAGCTCTTCCGTGCGCACGCGGGATTCGTCGCGGCGTTCGTACGGCGTTCGGGGCTCTGCGAGCATGAAGTCGACGATTGCGTCCAGGAGGTGTTCCTCCTCGCCCACCGATTGGGTGGCTACCGTCCAGGGCCGGCAAAGCCACGCACGTGGCTCGCCTCGATCGCCTTGAACGTCGTGCGCAGCACGATCCGAAAACATGCGCGCCGACGCACTGTCGCCGACGAGGAGAAGCTTGCGTCGGCGTTGGCCGACGAGACGGATCCGTTCAGCCGCGCGGCGGCGATCGAGGCGCTGTCCGTCATGCAGTCGATCTTGGACGTCCTCGACGAGGACCAACGAACCGCATTCCTTTTGCACGAAGTGCATGGCGAGGAGTGTTCCTCGATCGCGGCCGCATTCGGCGTTCCCGAAGGCACGGTTCGTTCACGTGTTCACCGCGCGAAACAGATGCTCATTGCCGAGTACGAGAAGAGGTCGAGGAGAAGCCCATGA
PROTEIN sequence
Length: 204
MVSVPIDELDRMQVEPSAHALVMKNLRADVSSTDEWPLRELFRAHAGFVAAFVRRSGLCEHEVDDCVQEVFLLAHRLGGYRPGPAKPRTWLASIALNVVRSTIRKHARRRTVADEEKLASALADETDPFSRAAAIEALSVMQSILDVLDEDQRTAFLLHEVHGEECSSIAAAFGVPEGTVRSRVHRAKQMLIAEYEKRSRRSP*