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SCNpilot_P_inoc_Myxococcales_68_7

In projects: SCNpilot_P_inoc

Consensus taxonomy: Myxococcales  →  Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 6.83 Longest contig: 295.41 Kbp Bin length: 11.84 Mbp GC content: 68.37 %
Contigs count: 421 Features count: 10148 rRNAs count: 0 tRNAs count: 0

Genome completeness

near complete RP 53 / 55 MC: 4 BSCG 51 / 51 MC: 7 ASCG 14 / 38 MC: 1
Displaying items 1-50 of 421 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_1906
Phylum: Proteobacteria (54.55%)
11 15791 bp 71.86 7.22 95.16
scnpilot_p_inoc_scaffold_4118
Species: Sorangium cellulosum (62.5%)
8 8632 bp 71.79 5.91 93.77
scnpilot_p_inoc_scaffold_59928
Species: Sorangium cellulosum (100%)
1 1185 bp 71.65 4.56 97.72
scnpilot_p_inoc_scaffold_3770
Phylum: Proteobacteria (71.43%)
7 9154 bp 71.54 4.97 98.45
scnpilot_p_inoc_scaffold_8283
Order: Myxococcales (60%)
5 5353 bp 71.25 5.86 95.44
scnpilot_p_inoc_scaffold_17749
Species: Chondromyces apiculatus (50%)
4 3084 bp 71.17 5.25 87.65
scnpilot_p_inoc_scaffold_4438
Order: Myxococcales (77.78%)
9 12923 bp 71.09 6.35 92.21
scnpilot_p_inoc_scaffold_11671
Order: Myxococcales (75%)
4 4198 bp 70.96 5.79 89.76
scnpilot_p_inoc_scaffold_1124
Domain: Bacteria (52%)
25 27193 bp 70.90 6.22 88.57
scnpilot_p_inoc_scaffold_1582
Species: Sorangium cellulosum (77.78%)
9 18751 bp 70.82 6.44 94.86
scnpilot_p_inoc_scaffold_1731
Order: Myxococcales (80%)
10 17168 bp 70.80 6.35 96.60
scnpilot_p_inoc_scaffold_3486
Species: Sorangium cellulosum (83.33%)
6 9690 bp 70.77 7.60 84.27
scnpilot_p_inoc_scaffold_3095
Species: Sorangium cellulosum (66.67%)
9 10509 bp 70.75 5.48 92.69
scnpilot_p_inoc_scaffold_18573
Order: Myxococcales (66.67%)
3 2985 bp 70.72 6.93 92.86
scnpilot_p_inoc_scaffold_5089
Species: Chondromyces apiculatus (50%)
6 7507 bp 70.67 7.75 86.16
scnpilot_p_inoc_scaffold_2501
Order: Myxococcales (77.78%)
9 12508 bp 70.60 6.38 92.89
scnpilot_p_inoc_scaffold_3699
Order: Myxococcales (75%)
12 9896 bp 70.50 6.43 81.49
scnpilot_p_inoc_scaffold_2030
Order: Myxococcales (56.25%)
16 14868 bp 70.48 6.58 87.87
scnpilot_p_inoc_scaffold_2302
Species: Sorangium cellulosum (54.55%)
11 13330 bp 70.40 6.25 90.65
scnpilot_p_inoc_scaffold_1702
Order: Myxococcales (55.56%)
9 17489 bp 70.39 7.44 95.32
scnpilot_p_inoc_scaffold_3354
Order: Myxococcales (50%)
8 9975 bp 70.36 5.82 93.86
scnpilot_p_inoc_scaffold_22638
Species: Sorangium cellulosum (75%)
4 2566 bp 70.34 5.49 98.32
scnpilot_p_inoc_scaffold_4639
Order: Myxococcales (62.5%)
8 7979 bp 70.32 6.15 86.10
scnpilot_p_inoc_scaffold_7256 7 5880 bp 70.29 6.43 91.07
scnpilot_p_inoc_scaffold_9301
Genus: Myxococcus (66.67%)
3 4934 bp 70.27 5.69 97.77
scnpilot_p_inoc_scaffold_3928
Species: Sorangium cellulosum (50%)
6 8905 bp 70.25 6.54 91.63
scnpilot_p_inoc_scaffold_23135
Species: Sorangium cellulosum (50%)
2 2526 bp 70.19 4.69 93.35
scnpilot_p_inoc_scaffold_2170
Species: Sorangium cellulosum (55.56%)
9 13972 bp 70.18 6.42 87.84
scnpilot_p_inoc_scaffold_9064
Order: Burkholderiales (50%)
4 5032 bp 70.15 5.69 88.06
scnpilot_p_inoc_scaffold_6308
Phylum: Proteobacteria (57.14%)
7 6468 bp 70.13 6.33 83.12
scnpilot_p_inoc_scaffold_1264
Order: Myxococcales (77.27%)
22 23835 bp 70.12 6.22 91.11
scnpilot_p_inoc_scaffold_5606
Species: Sorangium cellulosum (50%)
6 7027 bp 70.10 6.06 93.33
scnpilot_p_inoc_scaffold_2471
Domain: Bacteria (66.67%)
9 12628 bp 70.08 5.94 86.69
scnpilot_p_inoc_scaffold_3804
Order: Myxococcales (50%)
12 10421 bp 70.01 6.78 83.08
scnpilot_p_inoc_scaffold_9034
Domain: Bacteria (60%)
5 5047 bp 70.00 6.33 92.49
scnpilot_p_inoc_scaffold_1191
Phylum: Proteobacteria (53.33%)
15 25311 bp 70.00 6.36 89.07
scnpilot_p_inoc_scaffold_733
Order: Myxococcales (56.52%)
46 45735 bp 70.00 5.94 90.21
scnpilot_p_inoc_scaffold_3145
Order: Myxococcales (71.43%)
7 10406 bp 69.98 6.73 89.46
scnpilot_p_inoc_scaffold_4119
Order: Myxococcales (83.33%)
6 8632 bp 69.95 7.16 81.46
scnpilot_p_inoc_scaffold_1446
Order: Myxococcales (70%)
20 20622 bp 69.91 6.62 91.68
scnpilot_p_inoc_scaffold_17614
Species: Sorangium cellulosum (50%)
2 3101 bp 69.91 6.24 89.39
scnpilot_p_inoc_scaffold_1386
Order: Myxococcales (50%)
20 23628 bp 69.87 6.83 89.33
scnpilot_p_inoc_scaffold_4325
Order: Myxococcales (66.67%)
6 8375 bp 69.83 6.56 87.01
scnpilot_p_inoc_scaffold_578
Phylum: Proteobacteria (53.06%)
49 60101 bp 69.80 6.49 89.13
scnpilot_p_inoc_scaffold_1233
Order: Myxococcales (50%)
20 24649 bp 69.78 6.79 89.72
scnpilot_p_inoc_scaffold_1377 21 21920 bp 69.78 6.06 89.36
scnpilot_p_inoc_scaffold_1601
Domain: Bacteria (60%)
30 28721 bp 69.76 6.77 90.72
scnpilot_p_inoc_scaffold_1003
Order: Myxococcales (77.78%)
27 31344 bp 69.75 6.00 90.03
scnpilot_p_inoc_scaffold_5338
Order: Myxococcales (66.67%)
6 7277 bp 69.75 6.14 88.84
scnpilot_p_inoc_scaffold_953
Order: Myxococcales (55%)
20 33519 bp 69.68 6.48 94.91
Displaying items 1-50 of 421 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.