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scnpilot_p_inoc_scaffold_905_26

Organism: SCNpilot_P_inoc_Burkholderiales_68_20

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 MC: 2 ASCG 13 / 38 MC: 1
Location: comp(28247..28774)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2IQ15_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 69.6
  • Coverage: 161.0
  • Bit_score: 221
  • Evalue 6.20e-55
RNA polymerase sigma factor {ECO:0000313|EMBL:KHA79612.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinoba similarity UNIPROT
DB: UniProtKB
  • Identity: 69.9
  • Coverage: 166.0
  • Bit_score: 233
  • Evalue 2.90e-58
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 68.4
  • Coverage: 158.0
  • Bit_score: 212
  • Evalue 1.10e-52

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Taxonomy

Janthinobacterium lividum → Janthinobacterium → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 528
ATGCCTTCGCACCTCCATGCCCTCCACGTCCTCTACGCAGACCACCACGGCTGGCTGCTGGGCTGGCTGCGCCGCAGGCTGGGCTGCCCGCATGGCGCGGCGGACGTGGCGCAGGACACCTTCGTGCGCATCCTCGCCTCGCGCGACGCGCTGCTGGGCCTGCGCGAGCCGCGCGCCTACCTCACCACCACCGCGCAGCACCTGCTGATCGACCGCGCGCGCCGCCAGGCGCTGGAGCGCGCCTACCTCGCCGAACTGGCCGCGCTGGCCGACAGCCAGCCGGGCCTCGCGCCCTCGCCCGAAGACACCCTCGCCGCACTGCAGGCGCTGCAGCAGATCAGCGCCGCGCTCGACGGCCTGCCGCCCAAGCCCGCGCGCGCCTTCCTGCTGCACTACCTGGACGGCGAGCCGCAGGACGCCATCGCCGCCTCGCTCGGCGTCTCCCCCCGCATGGTGCGCAAATACCTGGTGCAGGCGCTGCTGCACTGCCATACCGCCATGGACCGGACCATGGCCGGCGGCGCATGA
PROTEIN sequence
Length: 176
MPSHLHALHVLYADHHGWLLGWLRRRLGCPHGAADVAQDTFVRILASRDALLGLREPRAYLTTTAQHLLIDRARRQALERAYLAELAALADSQPGLAPSPEDTLAALQALQQISAALDGLPPKPARAFLLHYLDGEPQDAIAASLGVSPRMVRKYLVQALLHCHTAMDRTMAGGA*