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scnpilot_p_inoc_scaffold_7978_3

Organism: SCNpilot_P_inoc_Burkholderiales_68_20

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 MC: 2 ASCG 13 / 38 MC: 1
Location: comp(3784..4338)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V8Z1_VARPE similarity UNIREF
DB: UNIREF100
  • Identity: 58.6
  • Coverage: 169.0
  • Bit_score: 181
  • Evalue 5.70e-43
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 58.0
  • Coverage: 169.0
  • Bit_score: 180
  • Evalue 4.70e-43
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADU37314.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source similarity UNIPROT
DB: UniProtKB
  • Identity: 58.0
  • Coverage: 169.0
  • Bit_score: 180
  • Evalue 2.30e-42

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 555
GTGTTCGAGCGTTACTACCGCGAGCTGCTGGGCTTTCTCGCGCGCAAGGTGGGCGACCGCGACGTCGCCGCCGACCTGGCGCAGGAGAGCTATGCCCGCGTCTATGCCGCCTCCGGCCGCGAGCGCGTGGCGCAGCCCCGGGCGCTGCTCTACGCCACCGCGCGCAACCTCGTGACCGACCACTACCGCCGCGCCAGCGTGCGCGCCGGGGTGGAAGTCGGCAGCGCGGCGGACGGCGCCGAAGCGCCCGGCGGCGGCCTGGGCCCCGCCTCGCTGGAGCCCGAGGCGCTGCTGGCCGGGCGCCAGCGGCTTGCCGCCATCGAGCAGGCGCTGGCCGCGCTGCCGCCGCGCCCGCGCCAGGCCTTCGTGTTCTACAAGCTCGACGGCCTGAGCCGCGCCGAAGTCGCGCGGAAAATGGGCATCAGCGTCAAGACCGTCGAAACGCACCTGGAAGTCGCCATGCAGGCCTGCCTGGCGCGGCTGCAGGCGCTCGACGGCGCCGCGCCTGCCCCCACCGCTGCGCCTGCGCGCAAGAAGCCTCGCCCCGCCCCATGA
PROTEIN sequence
Length: 185
VFERYYRELLGFLARKVGDRDVAADLAQESYARVYAASGRERVAQPRALLYATARNLVTDHYRRASVRAGVEVGSAADGAEAPGGGLGPASLEPEALLAGRQRLAAIEQALAALPPRPRQAFVFYKLDGLSRAEVARKMGISVKTVETHLEVAMQACLARLQALDGAAPAPTAAPARKKPRPAP*