ggKbase home page

scnpilot_p_inoc_scaffold_7667_1

Organism: SCNpilot_P_inoc_Burkholderiales_68_20

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 MC: 2 ASCG 13 / 38 MC: 1
Location: comp(3..1982)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MCY9_ACIET similarity UNIREF
DB: UNIREF100
  • Identity: 82.8
  • Coverage: 686.0
  • Bit_score: 1061
  • Evalue 0.0
RNA polymerase sigma-70 subunit RpoD similarity KEGG
DB: KEGG
  • Identity: 82.8
  • Coverage: 686.0
  • Bit_score: 1061
  • Evalue 0.0
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Com similarity UNIPROT
DB: UniProtKB
  • Identity: 82.8
  • Coverage: 686.0
  • Bit_score: 1061
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Acidovorax ebreus → Acidovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1980
ATGCCCGTGCAAAAGTCCGCGAAGTCTGCCAAGCCTGCCGCAGATGCCGCTGAAAAAACCGTTTCCCTCCCGGCCGCCAAAGCCGCAACGAAAGCGTCCACCGTGTCCACACCCAAAAGCAAAGCCCAGCTGCTCAAAGAAGCCGCCGATGAATTGTTGAAGAACGCCGAAGCGCAAGAGAAGAAGAAGCCCGCGCGCAAGCCCAAGGCCACCGCGGACGCCGATGCCGCGGCCGCCGAGGAAGCCCCCAAGAAGAAGGCCGGCCGCCCCGCCAAGGCCGCGGGCGCCGACGACACGGACGCCAAGCCCAAGGCCGCCGCCAAGGCACCCGCCAAGCGCGGACGCAAGCCCAAGGCCAAGGAAGAAGGCGAAGGCATGGGCGACGACGCCGACCTGTCGGACATCGAATCCGAATTGGAAGGCGAAGTCGAGGAAGCGCCGGTGGCCGATGTCGCCACCGAGAAGGTCAAGCCCCTGCGCATGAAGATCAGCAAGGCCAAGGAACGCGCCTTGATGAAGGAGTTCGGCCTGGACGAAACCGTCCTGTCCGAGGAAGACCTGGCCAAGCGCCGCTCGCTGCTCAAGAAGCTCATCACGCTGGGCAAGACGCGCGGCTACCTGACGCGGGTCGAGATTTCCGACCACCTGCCCGACAAGCTGGTGGACGCCGAGACCATGGAAGTCGTGGTCGCCATGCTCAACGACATGGGCGTGGCCGTGTACGAGCAGACGCCCGATGCCGAAACGCTGTTCCAGAACAACGTGACGCCCACGGCCACCACCGTGGAAGAAGCCGAGGAAGAAGCCGAGGCGGCCCTGTCCACCGTCGATTCCGAATTCGGCCGCACCACCGACCCCGTGCGCATGTACATGCGCGAGATGGGCACGGTGGAGCTGCTCACGCGCGAGGGCGAGATCGAGATCGCCAAGCGCATCGAGGGCGGCCTGCAGGACATGATGGAAGCCATCAGCGCCTCGCCCGCCACCATCGCCGAGATCCTCAACATGGCCGAGGAAATCCGCGAGGGCAAGGTCGTCATTTCCACCGTGGTGGACGGTTTCGTCGACGCCGACGAAAACGACGACTACGTGGCCGAGGAAGACTTCGACGAGTACGACGAAGCCGACGACGACGACGGCAAGGGCGGCTCCAAGGCGCTGACCAAGAAGCTCGAAGAGCTGAAGAACGAGGCCCTGCGCCGCTTCGACAAGCTGCGCGAGCAGTTCGAGAAGATGCACAAGGTGTACGACAAGGACGGCTACGGCGGCGCCACGTACATGAAGATCCAGCACACGATCTCGGCCGAGCTGATGACCATCCGCTTCACCGCCAAGACCATCGAGAAGCTGTGCGACATGGTGCGCGCCCAGGTGGACGACGTGCGCAAGAAGGAACGCGAGCTGCGCCGCATCATCGTGGACAAGTGCGGCATGCCGCAGGACACCTTCGTCAAGGACTTCCCGCCCAACCTGCTGAACCTGCAATGGGTGGAGCAGCAGGCCAGCGCCGGCAAGCCCTGGAGCGCCGTGCTGCAGCGCAACATCCCGCCCGTGCAGGAACTGCAGCAGAAACTGATCGACCTGCAGACCCGCGTGGTGGTGCCGCTGTCCGAGCTCAAGGACATCAACAAGCGCATGAACGCCGGCGAAATGGCCTCGCGCGACGCCAAGAAGGAGATGATCGAGGCCAACCTGCGCCTCGTGATCTCCATCGCCAAGAAATACACCAACCGCGGCCTGCAGTTCCTCGACTTGATCCAGGAAGGCAACATCGGCCTGATGAAGGCCGTGGACAAGTTCGAGTACCGCCGCGGCTACAAATTCTCGACCTACGCCACGTGGTGGATCCGCCAGGCGATCACCCGCTCCATCGCGGACCAGGCCCGGACCATCCGCATCCCGGTGCACATGATCGAGACCATCAACAAGATGAACCGCATCAGCCGCCAGCACCTGCAGGAGTTCGGCTTCGAGCCCGAT
PROTEIN sequence
Length: 660
MPVQKSAKSAKPAADAAEKTVSLPAAKAATKASTVSTPKSKAQLLKEAADELLKNAEAQEKKKPARKPKATADADAAAAEEAPKKKAGRPAKAAGADDTDAKPKAAAKAPAKRGRKPKAKEEGEGMGDDADLSDIESELEGEVEEAPVADVATEKVKPLRMKISKAKERALMKEFGLDETVLSEEDLAKRRSLLKKLITLGKTRGYLTRVEISDHLPDKLVDAETMEVVVAMLNDMGVAVYEQTPDAETLFQNNVTPTATTVEEAEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLQDMMEAISASPATIAEILNMAEEIREGKVVISTVVDGFVDADENDDYVAEEDFDEYDEADDDDGKGGSKALTKKLEELKNEALRRFDKLREQFEKMHKVYDKDGYGGATYMKIQHTISAELMTIRFTAKTIEKLCDMVRAQVDDVRKKERELRRIIVDKCGMPQDTFVKDFPPNLLNLQWVEQQASAGKPWSAVLQRNIPPVQELQQKLIDLQTRVVVPLSELKDINKRMNAGEMASRDAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQEFGFEPD