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scnpilot_p_inoc_scaffold_345_24

Organism: SCNpilot_P_inoc_Planctomycetales_70_10

near complete RP 50 / 55 MC: 2 BSCG 50 / 51 MC: 1 ASCG 14 / 38 MC: 3
Location: 25350..26087

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoS n=1 Tax=Glaciecola lipolytica E3 RepID=K6XYR5_9ALTE similarity UNIREF
DB: UNIREF100
  • Identity: 40.2
  • Coverage: 264.0
  • Bit_score: 151
  • Evalue 8.40e-34
RNA polymerase sigma factor RpoS {ECO:0000256|HAMAP-Rule:MF_00959}; Sigma S {ECO:0000256|HAMAP-Rule:MF_00959}; Sigma-38 {ECO:0000256|HAMAP-Rule:MF_00959}; TaxID=1127673 species="Bacteria; Proteobacter similarity UNIPROT
DB: UniProtKB
  • Identity: 40.2
  • Coverage: 264.0
  • Bit_score: 151
  • Evalue 1.20e-33
sigma S (sigma 38) factor of RNA polymerase, major sigma factor during stationary phase similarity KEGG
DB: KEGG
  • Identity: 39.8
  • Coverage: 264.0
  • Bit_score: 148
  • Evalue 3.40e-33

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Taxonomy

Aliiglaciecola lipolytica → Aliiglaciecola → Alteromonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 738
TTGCGGCGTAGCCCTTTCCCGGCCCGCCGGCCGCCGCGGCGGGTCGTCAAGGACGCGTTCCACGCGACGCTGGGCGCCGTCCCGCTCCTCACCGCCGAGGAGGAGGTCGAGCTGGCCCGGCGTCGCGACGCCGGCGACGGCGAGGCCCTCGACCGGCTGATCGTCGCCAATCTCCGCTGGGCGGTCCGCGTGGCGACGCGGCACCGGCACGTCCACGGCGGCGACCAGGACGACCTGGAGCAGGCCGCGATCGGCGGGCTGATGAGGGCGGCCCGGAAATTCGACCCGGACCGGGGTGTGAGGTTCAGCACCTACGCGACGTGGTGGATCCGCCAGGCCCTCGCCCGCCACGCCGGCGAGGCCCGCCTCATCCACGTGCCCGAGAACCCGCAGGCCCGGGCGTCCGAGGAGGCGGCGAGGGCGAGGGCGATCGCCTCGATCGACGAGCCGAACGAGCACGGGTCGACCCCGTCCGAGCTGCTGGCCGATCGCGGAGAGGCGCCGGAGGAGGCGATGCGGCGGGAAGAGGCCGCCGGCGTGCTGGCCGCCGCCGTGCGCCGGCTGGGCCCGCGCGACGCGGAGGTCCTGCGCCGCCGCTACGGCCTCCAGGGCGGCGAGCCCGAGACCCTCAAAGAGGTGGGCGACCGCCTCGGCCTGACGCGGGAGCGCGTCCGGCAGATCGAGAAGCGCGCGAGGGAGCGCCTGGCGAGGCTGCTGGCGCCCGCGGTCGCGAACTGA
PROTEIN sequence
Length: 246
LRRSPFPARRPPRRVVKDAFHATLGAVPLLTAEEEVELARRRDAGDGEALDRLIVANLRWAVRVATRHRHVHGGDQDDLEQAAIGGLMRAARKFDPDRGVRFSTYATWWIRQALARHAGEARLIHVPENPQARASEEAARARAIASIDEPNEHGSTPSELLADRGEAPEEAMRREEAAGVLAAAVRRLGPRDAEVLRRRYGLQGGEPETLKEVGDRLGLTRERVRQIEKRARERLARLLAPAVAN*