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scnpilot_p_inoc_scaffold_24_182

Organism: SCNpilot_P_inoc_Stenotrophomonas_69_27

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 14 / 38 MC: 1
Location: comp(203103..203378)

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein Hfq n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003A42C99 similarity UNIREF
DB: UNIREF100
  • Identity: 93.4
  • Coverage: 91.0
  • Bit_score: 169
  • Evalue 1.50e-39
hfq; RNA-binding protein Hfq similarity KEGG
DB: KEGG
  • Identity: 93.4
  • Coverage: 91.0
  • Bit_score: 169
  • Evalue 5.30e-40
RNA-binding protein Hfq {ECO:0000255|HAMAP-Rule:MF_00436}; TaxID=509169 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas ca similarity UNIPROT
DB: UniProtKB
  • Identity: 93.4
  • Coverage: 91.0
  • Bit_score: 169
  • Evalue 2.60e-39

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Taxonomy

Xanthomonas campestris → Xanthomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 276
ATGTCCAAGGGGCAATCTTTGCAGGACCCGTTCCTGAACGCACTGCGCCGCGAGCGCGTGCCGGTTTCGGTGTACCTGGTCAATGGCATCAAGCTGCAGGGCACGATCGAGTCGTTCGACCAGTTCGTGGTGCTGCTGCGCAATACGGTCAGCCAGATGGTCTACAAGCACGCCATTTCCACCGTGGTGCCGGCGCGCAACGTGCGCGTGGGGCCGGGCGGCGGCTACGTGCAATCGGCCGACAGCAATCAGGCAGGCGATGACGACAACGAATAA
PROTEIN sequence
Length: 92
MSKGQSLQDPFLNALRRERVPVSVYLVNGIKLQGTIESFDQFVVLLRNTVSQMVYKHAISTVVPARNVRVGPGGGYVQSADSNQAGDDDNE*