ggKbase home page

scnpilot_p_inoc_scaffold_190_120

Organism: SCNpilot_P_inoc_Stenotrophomonas_69_27

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 14 / 38 MC: 1
Location: 134637..135620

Top 3 Functional Annotations

Value Algorithm Source
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonada similarity UNIPROT
DB: UniProtKB
  • Identity: 84.5
  • Coverage: 328.0
  • Bit_score: 548
  • Evalue 5.80e-153
23S rRNA pseudouridine synthase D n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000307B200 similarity UNIREF
DB: UNIREF100
  • Identity: 84.7
  • Coverage: 326.0
  • Bit_score: 547
  • Evalue 7.00e-153
  • rbh
rluD; ribosomal large subunit pseudouridine synthase D similarity KEGG
DB: KEGG
  • Identity: 80.7
  • Coverage: 326.0
  • Bit_score: 539
  • Evalue 5.40e-151

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Stenotrophomonas rhizophila → Stenotrophomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 984
ATGTCCGACAACGCTTCCCTTCCTTCCCGCCAGGCGCGGGTGCCCGACGCCGCCGCCGGCCGCCGTTTCGACGCGGTGCTGGCCGAGCTGTTCCCCGAATTCTCCCGTTCCCGCCTGAGCGAATGGATCAAGTCCGGGGCGGCGCTGCTCGACGGCGTCCCGGCCCGTCCGCGCGATCCGGTGCGCGGCGGCGAGCTGGCGATCCTGAATGCGACGCTGGACACCGAGACCGACGCCATCCCCGAGGACATCCCGCTGTCGGTCCTGTACGAGGACGAGCATGTCTTCGTGATCGACAAGCCGGCCGGGCTGGTGGTCCACCCGGGGGCCGGCAACCCCACCGGTACCCTGGTCAACGCGCTGCTGTTCCGCGACCCGTCGCTGGCATCGGTGCCGCGCGCCGGCGTGGTCCACCGGCTGGACAAGGACACCAGCGGGGTGATGGTCGTGGCCCGCACCCTGCAGGCGCAGACCGCGCTGGTGGAGCAGTTGTCCGCGCGCGAGGTGCACCGCCAGTACCTGGCCGTGGTGAGCGGCGCGCTGGTGTCCGGCGGCACCGCCGATGCGCCGATCGACCGCCACCCGCGCGACCGCCTGCGCATGGCCGTGCGCGAGGACGGCCGCGATGCGGTCACCCATTACCGCCTGCGCGAGCGCTTCCGCGCCCATACCGCGCTGGAATGCCGGCTGGAAACCGGCCGTACCCACCAGATCCGCGTGCACATGGCGCACCTGAAGCACCCGATCATCGGCGACCCGCTCTACGGCGGCGCGCTGAAGCTGCCCAAGGGCGCCACCGACGAACTGGTTTCGCAGCTGCGCGGCTTCAAGCGCCAGGCGCTGCACGCCGAGACGCTGGAATTCACGCACCCGATCACCGGCGAGGCGATCCGCAACAGCGCGCCGGTGCCGGCCGACATGCTGGCGCTGATGAAGGCGCTGCGCGAGGACAGCATCCTGTTCGCCGAACGCGAGCGGCGCTGA
PROTEIN sequence
Length: 328
MSDNASLPSRQARVPDAAAGRRFDAVLAELFPEFSRSRLSEWIKSGAALLDGVPARPRDPVRGGELAILNATLDTETDAIPEDIPLSVLYEDEHVFVIDKPAGLVVHPGAGNPTGTLVNALLFRDPSLASVPRAGVVHRLDKDTSGVMVVARTLQAQTALVEQLSAREVHRQYLAVVSGALVSGGTADAPIDRHPRDRLRMAVREDGRDAVTHYRLRERFRAHTALECRLETGRTHQIRVHMAHLKHPIIGDPLYGGALKLPKGATDELVSQLRGFKRQALHAETLEFTHPITGEAIRNSAPVPADMLALMKALREDSILFAERERR*