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scnpilot_p_inoc_scaffold_190_155

Organism: SCNpilot_P_inoc_Stenotrophomonas_69_27

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 14 / 38 MC: 1
Location: comp(179476..180000)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-24 n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000363E9A7 similarity UNIREF
DB: UNIREF100
  • Identity: 42.6
  • Coverage: 155.0
  • Bit_score: 130
  • Evalue 1.90e-27
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EKU76810.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" sour similarity UNIPROT
DB: UniProtKB
  • Identity: 41.9
  • Coverage: 155.0
  • Bit_score: 128
  • Evalue 7.60e-27
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 45.6
  • Coverage: 158.0
  • Bit_score: 126
  • Evalue 5.80e-27

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Taxonomy

Sphingobium yanoikuyae → Sphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 525
ATGCCGTTCACCGCAGACCAGGTCCTGGCCATGCGATGGGAGCCGGACCACGTCCGCCACTTCCGTCCCATGCTGCTGCGTTACTTCCGCCGCCATCTGCAGCACGACGCCGATGCCGAGGACCTGGCGCAGGAGGCGCTCATCCGCCTGGCGCGCTCGCCGACACGCGTGGACAACGCCGAGGCCTACGTGCTGCGCATCGCTTCCAACCTGCTGCGCGACCGTTTCCGCCGCGACCGCAGCCACCACGCCGGACAGCACGAGCCGCTCGATGCCAGCGTGCATGAACTGCCCAGTGAGGAACCGGCCGGCTATCACGTCTACGCGGGCAGGGAGCGGCTGCAGCAGTTGCTGGCGGCATTGGACGAACTCCCACCACGCTGCCGGGAGGTATTCCTGCTGCAGCGCTACGAAGGCATGACCTATGCCGCCATCGCGCTGCAGCTCCAGGTGAGCGTGAGCGCGGTGGAAAAACACATGATGCGCGCACTGCTGCACCTGCAGTCGCGACTGGCGGAAACATGA
PROTEIN sequence
Length: 175
MPFTADQVLAMRWEPDHVRHFRPMLLRYFRRHLQHDADAEDLAQEALIRLARSPTRVDNAEAYVLRIASNLLRDRFRRDRSHHAGQHEPLDASVHELPSEEPAGYHVYAGRERLQQLLAALDELPPRCREVFLLQRYEGMTYAAIALQLQVSVSAVEKHMMRALLHLQSRLAET*