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scnpilot_p_inoc_scaffold_485_1

Organism: SCNpilot_P_inoc_Stenotrophomonas_69_27

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 14 / 38 MC: 1
Location: comp(288..965)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor, sigma-70 family protein n=1 Tax=Xanthomonas axonopodis pv. punicae str. LMG 859 RepID=H1XGJ4_9XANT similarity UNIREF
DB: UNIREF100
  • Identity: 40.2
  • Coverage: 224.0
  • Bit_score: 166
  • Evalue 3.90e-38
RNA polymerase sigma factor, sigma-70 family protein {ECO:0000313|EMBL:CCF68324.1}; TaxID=1085630 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas similarity UNIPROT
DB: UniProtKB
  • Identity: 40.2
  • Coverage: 224.0
  • Bit_score: 166
  • Evalue 5.50e-38
putative RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 29.9
  • Coverage: 231.0
  • Bit_score: 110
  • Evalue 7.20e-22

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Taxonomy

Xanthomonas axonopodis → Xanthomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 678
ATGGACTCCATCGAGAAGGAACTCTGGCGTAGATACACACAGCTATCCGACTCGGAGGCGCGTGATTTCCTGTTCCTTCGCTACTGCCCATGGGCGCGATCGGTGGCGCGATCGGTGGCGCTGCGCACTGCGTTGCGCATGATGGAGTGGGCCGACCACGTCCAGAACGCGCAACTCGGCCTGCTTGAAGCGATGACACGTTATGACCCGGAATATGGCATAGATTTCATTGGATACGCCAAGCCAAGGGTGCGCGGCGCGGTATTCAATGGAATGAGGAACTTTCTCCGGGCGGACGCGATGGACAGCAAGCATCGAGTGCCGCTGGAACGACTGGAATCGATGCGCGATGGCGAGAGCGATGGTCTGGTTGCCTTCGTCGATAGTGTCGTCGGACTGGGCTTGGGCCTGATGCTGGATGGGCAGTGCGCGGACTTCAATGCTGAAAGATACGATTCATGGAACTGGAGTTCACTGCTGCACGAGTCGCTTCTCGATATTCCGGCACGCCGTCGCGAGATACTGATCGATCACTACATCCATCAAAAACAGTTCCAGGATATTGCGAGAGAGATGGGGGTAACCAAGGGCAGGGTGTCTCAGCTGCACAAGGAGGGAATAGCTGCGCTCAGAGAGTGCCTGCGGAGGCGGAATATGGAAAGGAGTAGCTTCTTCTGA
PROTEIN sequence
Length: 226
MDSIEKELWRRYTQLSDSEARDFLFLRYCPWARSVARSVALRTALRMMEWADHVQNAQLGLLEAMTRYDPEYGIDFIGYAKPRVRGAVFNGMRNFLRADAMDSKHRVPLERLESMRDGESDGLVAFVDSVVGLGLGLMLDGQCADFNAERYDSWNWSSLLHESLLDIPARRREILIDHYIHQKQFQDIAREMGVTKGRVSQLHKEGIAALRECLRRRNMERSSFF*