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scnpilot_p_inoc_scaffold_485_35

Organism: SCNpilot_P_inoc_Stenotrophomonas_69_27

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 14 / 38 MC: 1
Location: comp(42332..42922)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-E factor protein n=1 Tax=Herbaspirillum sp. GW103 RepID=I3CPN5_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 70.4
  • Coverage: 179.0
  • Bit_score: 240
  • Evalue 1.10e-60
RNA polymerase sigma factor {ECO:0000313|EMBL:EOA02068.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirill similarity UNIPROT
DB: UniProtKB
  • Identity: 69.3
  • Coverage: 179.0
  • Bit_score: 240
  • Evalue 1.50e-60
rpoE; RNA polymerase sigma-E factor protein similarity KEGG
DB: KEGG
  • Identity: 69.8
  • Coverage: 179.0
  • Bit_score: 237
  • Evalue 2.60e-60

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Taxonomy

Herbaspirillum frisingense → Herbaspirillum → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 591
ATGACCGCCGCCATCTCCACCACGGGGGCCGGATCTGCAGCCATGGCCGATCCGGTCGAGTCTGCGCTGCGCGTGCTGTTCGAAGCCGGCCTGGGAGGCGATCCCGACGCCTATCGGTGCTTCCTGGATGAACTGAGCGCACGCCTGCGTGCCTTCCTGCGGCGCCGGCTGGGTGGGTCGCCGGATGACGTCGAGGACATCCTGCAGGAGACCCTGCTGGCCATCCACAACAGCCGCCACACCTACCGCAGCGGCCAGCCGCTGACTGCGTGGGTCTATGCCATCGCCCGCTACAAGCTCATGGACTTCCATCGCAGTCACCACCGGCGCGAAGCGCTGAACCTGCCGCTGGAGGCGGCGCAGGACGTGTTCGCGGCCGCCGACACCGAATCGACCCACGCCCGGCACGATATCGGCCAGCTGCTGGAGGCGCTGCCGGACCGGCATCGCCTGCCGATCCTGCACGTCAAGCTCGGCGGCCTGTCGGTCAGCGAAACCGCACGCCTGACCGGCATGTCCGAGTCGGCGGTGAAAGTAGGCATCCACCGCGGCCTGAAGGCGCTGGCCTTGAAAATACGGAGTGCAGCATGA
PROTEIN sequence
Length: 197
MTAAISTTGAGSAAMADPVESALRVLFEAGLGGDPDAYRCFLDELSARLRAFLRRRLGGSPDDVEDILQETLLAIHNSRHTYRSGQPLTAWVYAIARYKLMDFHRSHHRREALNLPLEAAQDVFAAADTESTHARHDIGQLLEALPDRHRLPILHVKLGGLSVSETARLTGMSESAVKVGIHRGLKALALKIRSAA*