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scnpilot_p_inoc_scaffold_225_25

Organism: SCNpilot_P_inoc_Microbacterium_67_17

near complete RP 50 / 55 MC: 2 BSCG 50 / 51 ASCG 11 / 38
Location: comp(26367..29990)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=979556 species="Bacteria; Ac similarity UNIPROT
DB: UniProtKB
  • Identity: 79.2
  • Coverage: 999.99
  • Bit_score: 1842
  • Evalue 0.0
transcription-repair coupling factor n=1 Tax=Microbacterium yannicii RepID=UPI0002E99FBC similarity UNIREF
DB: UNIREF100
  • Identity: 81.1
  • Coverage: 999.99
  • Bit_score: 1900
  • Evalue 0.0
mfd; transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 79.2
  • Coverage: 999.99
  • Bit_score: 1842
  • Evalue 0.0

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Taxonomy

Microbacterium testaceum → Microbacterium → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 3624
GTGGCTTTTCCCGGGATCTCGCGCGCCCTCGACCGCTCCGAGCACTTCCGGGATGTGGTTGCGGCGGCTGCCGTCGATGCCGACGTCTCGGTTGTCGACGGCCTGGATGCCCCGCTGCTGAGCGCTCTCGTTCGTCGGCGCCGGGACGCGGGCAAGCCGCCTGTGTTGCTAGCGATAGCCCCGACCGGTCGCCGGGTTGAGTCGCTGATTCCGGCACTGCGGGCCCTTCTTCCCGAAGCGGCGGTGCTGCCCTTTCCCGCGTGGGAGACCCTGCCGCACGAGCGGCTGAGCCCCAGTCCTGAGACGGTTGGACGCCGGCTGGAGACGCTCGCCCGTGTCGCATCCTCTGCTGGGGCGCAGCCGGTCGTCGTCGTCGCGTCGGTGCGCGCGGCGCTGCAGCCGCTGGCCGCGGGGCTTGCCGCGGTCGAACCGGTGCGGCTGCGTGCCGGTGAACGCGGCCACGATCTGGCGGTGATCGTCGAGCGGCTGGTCGAACTTGCCTACCACCGTGTGGATATGGTCTCGCGTCGCGGCGAGTTCGCGGTGCGCGGCGGCATCCTGGATGTGTTCCCGACCGTCGCCGACCATCCGTATCGTGTGGAGTTCTTCGGCGACGAGGTCGAGCAGATCCGCACGTTCTCGGTCGCTGACCAGCGTTCCCTGCCTGGCGCGGTCGAAGCCGTCGATCTCCTTCCCGGGCGCGAGCTCCTGCTCACAGCCGATGTTCGCGCTCGTGCACGGCAGCTGGCCGCGGAGTTCGCGGGGCTGCAGGGGATGCTCGAGAAGATGGCGGAGGGGATCCCTGCCGAGGGGATGGAGTCGTTGACGCCGGCGCTCGTGCCGCGGATGGCGACACTCGTCGACTATCTGCCCGAGGGATCCGCCGTTGTCCTCGTGGACCCCGAGCGGTCCCGCACGCGGGCACGGACTCTCGCCGAGACCAACCACGAGTTCCTGGAAGCCGCGTGGAGCGCAGCGACGGCTGGTGCGAGCACGCCGGTCGATCTCGGAGGGGGCGACTTTCTGACGATTGCCCAGTTGCGGGCGGCGGTTCACGATCGCTCCGGCGTGTGGTGGACGCTGAGCCCCTTCGACTCGGGAGCCGCCGACGCGGCAGCCGAGGGGCTGCTCGCGGACGACCTCGATGACATGCTCGGCGATGCGCCCGTGAGGATTCCCGCACGGCCGGTGCCGTCGTTCCACGGCAACGTCGAGGGGGCCACCGCCTATGTCGGGGAACGGGTTGCCGCAGGCTGGAGCGTTGTCGTCACGGCATCCGGCACGGGACTGGTCGAACGCGCCCGCGACGTGCTCGCCGACCGCGAGATCGCGGCGGCCATCATTGACGATGCGGATGCCTCGCCCGAGCCCGGCCGCGTCTTGCTCGCGGTGGCCCAACTCGAGCGCGGGTTCGAGCTCGAGGACGCCCAACTGGCTGTGCTCACGGAGTCCGAGTTCTACGGACGCACGATTGGCGGCGACAGCCGTGTCGTCAAGAAGCTCGCGTCCAAGCGCCGGAACGTCGTCGATCCACTGCAACTGGCTCCCGGCGATCACGTGGTGCACGCCACGCACGGGATCGGACGGTTCGTCGAGCTCGCCAAGCGCGAGGTGTCGTCGGGTGGCCGCAATCCGGTCAAGAGCGTGCGCGAGTACGTCGTGCTCGAATACGCGCCGTCCAAGCGCGGGTACCCCGGCGACAAGCTCATGGTGCCGACCGACCAGCTCGATCTTCTTTCGCGGTACGTGGGCGGTGAGGCGCCGACCCTCTCGAAGATGGGCGGCAGCGATTGGGCGCAGGCGAAGGGCCGCGCGCGCAAGGCGGTGCGCGATATCGCCGTCGAACTCGTCAAGCTCTACTCGGCGCGGATGGCTGCGAAGGGTCATGCCTTCGGACCCGACACGCCGTGGCAGCGCGAACTCGAAGAGGCATTCCCGTTCGCCGAGACGATGGATCAGCTGCAGACCATCGACGAGATCAAAGCCGACATGGAGCGGCCGATCCCCATGGACCGACTCTTGTCGGGGGACGTCGGCTTCGGCAAGACCGAGGTTGCCGTGCGGGCCGCGTTCAAGGCGATCCAGGACGGCAAGCAGGTCGCGATGCTCGTGCCGACGACGCTGCTTGTCAAGCAGCACCTCGAGACGTTCACCGAGCGCTTCGCAGGCTTCCCCGTGAAGGTCAAGGCGCTCTCGCGCTTCCAGACCGACAAGGAGGCGCGCGAGACTCTCGCCGGCCTCACCGATGGCACCGTCGACATGGTCATCGGCACGCACCGGATCCTCACCGAGAAGGTGATCTTCAAGGATCTCGGCCTCATGATCATCGACGAGGAGCAGCGGTTCGGTGTCGAGCACAAGGATGCCCTGAAGAAGCTCAAGACGAACGTCGACATCCTCGCGATGAGCGCGACGCCCATCCCTCGAACCCTGGAAATGGCGGTGACCGGCATCCGGGAGATGTCGACGCTGCAAACACCACCCGAAGACCGGCATCCGATCCTCACCTACGTCGGCGCCCGCAACGACAAGCAGATCGCGGCAGCGATTCGCCGGGAGCTGCTGCGGGAAGGTCAGGTCTTCTACGTCCACAATCGCGTGAGTTCCATCCAGCGGGTCGCGAGCGAGCTGGCGGAGCTCGTGCCCGAGGCGCGGGTCGTGGTCGCTCACGGGCAGATGGGCGAGCACCAGCTCGAGCAGGTCGTCGACGACTTCTGGGAGCGCAAGGCCGACGTGCTCGTCTCGACGACGATCATCGAGACCGGCCTCGATATCGCCAACGCCAACACGATCATCATCGACCGGGCCGACAAGTACGGACTCTCGCAGCTGCATCAGCTGCGTGGGCGCGTGGGACGCGGTCGTGAGCGGGCCTATGCGTACTTCCTGTACGACGACGCGAAGCCACTCTCAGAGACCGCTGCCGACCGTCTCGAGACGATCGCTGTCAACAACGATCTCGGCAGCGGCATGCAGGTCGCGCTCAAGGACCTCGAATTGCGCGGGGCTGGAAACCTCCTCGGTGCCGAGCAGGCGGGCCACATCGCAGGGGTCGGGTTCGACCTGTATCTGCGGATGATCGGTGAGGCTGTCGCGACCTTCCGCGGCGAAGACGTCGAGGGTCCGGCTGAGTTGCGGCTCGAGCTTCCCGTGCAGGCCCGGATCCCCGAGGACTACATCGACAGCGAGCGGCTCCGGCTCGAGGCTTACCAGAAGCTCTCTGCCGCGGCATCCGCGACGGCCAAGGATGACGCGATCGACGCCGTCATCGAGGAGCTCACCGACCGCTACGGCGAGCCCCCGGCGGAGGTCGCGGGGCTGCTTTCGATGGCGCGGCTGCGGCGTCGCGCCGCGCGCGCAGGCCTGACGGATGTCGTCGCGATGGGGCCGAACCTGCGGATCGCGCCCGCGCGCCTGGCGGATTCGATGCGCGTGCGCCTGCAGCGGCTGTATCCCGCAGCCAAGCTGTTGGCCGGTGGCGAGGCTGTCGTCGTGCCGTTGCCCCGCGCTGGCGGTGAGCCAGTGGCAGAAGCCGACCTCATCGCATGGGTCGACACGCTTCTCGGTCAGCTCTGGCCCGAGCCCGTCGCCGCTGACACTGGCGCTCCGGCAGTCCAGGACTAG
PROTEIN sequence
Length: 1208
VAFPGISRALDRSEHFRDVVAAAAVDADVSVVDGLDAPLLSALVRRRRDAGKPPVLLAIAPTGRRVESLIPALRALLPEAAVLPFPAWETLPHERLSPSPETVGRRLETLARVASSAGAQPVVVVASVRAALQPLAAGLAAVEPVRLRAGERGHDLAVIVERLVELAYHRVDMVSRRGEFAVRGGILDVFPTVADHPYRVEFFGDEVEQIRTFSVADQRSLPGAVEAVDLLPGRELLLTADVRARARQLAAEFAGLQGMLEKMAEGIPAEGMESLTPALVPRMATLVDYLPEGSAVVLVDPERSRTRARTLAETNHEFLEAAWSAATAGASTPVDLGGGDFLTIAQLRAAVHDRSGVWWTLSPFDSGAADAAAEGLLADDLDDMLGDAPVRIPARPVPSFHGNVEGATAYVGERVAAGWSVVVTASGTGLVERARDVLADREIAAAIIDDADASPEPGRVLLAVAQLERGFELEDAQLAVLTESEFYGRTIGGDSRVVKKLASKRRNVVDPLQLAPGDHVVHATHGIGRFVELAKREVSSGGRNPVKSVREYVVLEYAPSKRGYPGDKLMVPTDQLDLLSRYVGGEAPTLSKMGGSDWAQAKGRARKAVRDIAVELVKLYSARMAAKGHAFGPDTPWQRELEEAFPFAETMDQLQTIDEIKADMERPIPMDRLLSGDVGFGKTEVAVRAAFKAIQDGKQVAMLVPTTLLVKQHLETFTERFAGFPVKVKALSRFQTDKEARETLAGLTDGTVDMVIGTHRILTEKVIFKDLGLMIIDEEQRFGVEHKDALKKLKTNVDILAMSATPIPRTLEMAVTGIREMSTLQTPPEDRHPILTYVGARNDKQIAAAIRRELLREGQVFYVHNRVSSIQRVASELAELVPEARVVVAHGQMGEHQLEQVVDDFWERKADVLVSTTIIETGLDIANANTIIIDRADKYGLSQLHQLRGRVGRGRERAYAYFLYDDAKPLSETAADRLETIAVNNDLGSGMQVALKDLELRGAGNLLGAEQAGHIAGVGFDLYLRMIGEAVATFRGEDVEGPAELRLELPVQARIPEDYIDSERLRLEAYQKLSAAASATAKDDAIDAVIEELTDRYGEPPAEVAGLLSMARLRRRAARAGLTDVVAMGPNLRIAPARLADSMRVRLQRLYPAAKLLAGGEAVVVPLPRAGGEPVAEADLIAWVDTLLGQLWPEPVAADTGAPAVQD*