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scnpilot_p_inoc_scaffold_267_16

Organism: SCNpilot_P_inoc_Sphingobacteriales_44_17

near complete RP 47 / 55 MC: 1 BSCG 47 / 51 ASCG 13 / 38
Location: 19009..22380

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=485918 species="Bacteria; Ba similarity UNIPROT
DB: UniProtKB
  • Identity: 65.2
  • Coverage: 999.99
  • Bit_score: 1480
  • Evalue 0.0
Transcription-repair-coupling factor n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PET5_CHIPD similarity UNIREF
DB: UNIREF100
  • Identity: 65.2
  • Coverage: 999.99
  • Bit_score: 1480
  • Evalue 0.0
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 65.2
  • Coverage: 999.99
  • Bit_score: 1480
  • Evalue 0.0

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Taxonomy

Chitinophaga pinensis → Chitinophaga → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 3372
ATGAATCTACAGAGCATCACGGGGATATATGCAAATGATATTCACGTAAAGGAAATAGCGGCAGGTATCTCTCTACGGGAACCTAAGCTCAGGGTGAACATTAAGAATATGATAGGGAGCAATTTTACATTTCTCTCCCACGCCGTATGGAAAACAGCGCAGTCCAACCACGTATTTGTTTTGCCGGATAAGGAGCAGGCGGCCTATTTTCAGAATGACTTCGAGCATATTTCAGATGCCCTGGATATCTTCTACTTCCCGGACTCTTTCAAAAAGGAAGGCAACTTCCACCTGCTCAACAGCAGTAATATAATGCTGCGGACGGAAGCGCTTTCCAAGATACAGGACAATACCCACAGGAAAGTGCTGGTGACCAGCCCGGAAGGACTGTTTGAAAAAGTAGTGCATCATAAGGCGCTTACCGGGAATATGATCCATATCAAATCGGGCGATAACCTGGATACGGATACCCTGTTATCCCGGCTGGTGGACCTGGGATTCAGGCACGAAAGCTTTGTCTATGAGCCGGGCCAGTTCGCGCTGCGTGGCGGCATACTCGATATTTATTCCTATGGTAATGAGCACCCTTACCGTATTGAGCTGTTCGGGAAGGAAGTGGACAGCATCCGCCTCTTTGACCCGGAAACCCAGCTATCGGTCAAAAAGCTGGTACAGGTGTCCATCATTCCCAATATAGAGACCCAGTTCAGCAGCAGGGACCGGATCTCCATCCTGGATTACCTGCCGGATAATACCGTATTCTGGTTCAGGGACTATGAATATGCTATGGAAAAGCTGCGCGTGCTTTCGGAAAAGCTGAAGGACCAGCTGGTCAGGGAGCGTTCGGAATTTGAAGCCTCGGAGGAGCAGTGGGTCAAAGAAATGCAGGTGGAGGACTTTGAAGATACGGACAGCTTTATAGAAAAGCTGAAAAGAAGGCACGTCATCAACTGGAGCGGCAAGGATATGACGCTGGACGATTATCCTGCCGCGACCATAGAATGGCAGTCCGAAGAGCAGCCGGTGTTCAACAGGAACTTCCAGCTCCTGATAGCCGACCTGCAGCAGCGCACCAGGAACAATTATACCTGCTACATCTTTGCGGAGAATGCCCGCCAGCTGGAACGGCTGCGGAGCATCTTTGAGGACGCCCAGGCCCTGGTGGACTTTGTGCCGGTTCCCATATCGGTGACCAAGGGCTTTATAGATCATAAATACAAGCTCGTCTGCTATACGGACCACCAGATATTCCAGCGCTTTCATAAATACAAGGTCAAGCAATCCTATACCAAGGGAAAGGCCATTACGCTGAAGGCACTGAGAGAGCTGCAGCCGGGCGATTATGTCACGCACATAGACCACGGGGTCGGCCAGTTCAGCGGGCTGCAGAAGATAGAAGTGAACGGCAATATGCAGGAGGCCGTCCGTATCATTTACCGGGATAACGATGTGCTGTATGTCAACATCAACTCCCTGCACAAGATCAGCAAATATACGGGCAAGGAAGGTGTGACGCCCAGGATCAATAAGCTGGGCAGCGACGCCTGGGAAAAGCTGAAGAACAAGACCAAGAAGCAGGTAAAGGATATCGCTACGGACCTTATCAGGCTGTATGCCAAGCGTAAGGCCAGTCATGGCTTCGCCCATGCGCCGGATACCTACCTGCAGGTAGAGCTGGAATCCTCTTTTCTGTATGAAGATACGCCGGACCAGAGCAAAGCGGTGGCGGATGTCAAGCGGGATATGGAAAGCCCGGCGCCTATGGACAGGCTGGTTTGCGGGGATGTAGGCTTCGGTAAGACCGAGGTGGCGGTACGTGCGGCCTTTAAGACGGTGAATGACAGCAAGCAGGCAGCCATCCTGGTACCGACCACTATCCTGGCCTACCAGCATTATAAAACGTTCAGCGACCGCTTAAAGGATTTCCCGGTCAATATCGACTACCTGAACCGGTTCAAATCCGCTAAGGAAAAGAAGGAAACGCTTAAAAAACTCGAAGAGGGAAAAATAGATATCATCGTGGGTACGCATGCGCTGCTTGCCAAAGATGTAAAATTCAGAGACCTGGGACTGCTGATCATAGACGAGGAGCAGAAATTCGGGGTGGCGGCCAAGGAAAAATTAAGGGAGCGCAAGAGTAATGTGGACACCCTGACGCTGACGGCCACACCGATACCGAGGACTCTGCAATTCTCGCTGATGTCGGCAAGGGACCTGAGCATCATCAATACGCCGCCGCCCAACCGGCAGCCTATCCATACCGAGCTGATGGGCTTTAACGAGCTGGCCATCCGTGACGCTATTTATTACGAGGTGGAACGGGGAGGGCAGGTGTACTTTGTGCATAACAGGGTGCAGAGCCTGGACAGTATGGCCCGGAAGCTGAAAGACCTGTGCCCTGATGTGGAATTTGCGGTGGCGCACGGGCAGATGGAAGGTGCCAAGCTGGAAAAGGTACTGCTGGATTTTATCAATCATAAATTTGACGTCCTGGTCTGTACCAATATCGTGGAAAGCGGTGTGGACATTTCCAACGCGAATACGATTTTTGTCAACAACGCGCACCAGTTCGGGCTCAGCGACCTGCACCAGCTGAGGGGTCGTGTGGGCCGGAGCAATAAGAAAGCTTTCTGCTACCTAATGGCCCCTTCGCTGCTCACCCTGCCGGAAACCAGCCGGAAGCGGCTGCAGGCCCTGGAGCAGTTCAATGAGCTGGGCAGCGGCTTCCAGATCGCTATGAGAGACCTGGATATCAGAGGAGCGGGCAATATACTGGGCGGTGAGCAGAGCGGCTTCATTACGGAGATCGGGTTCGATATGTACCAGAAAATACTGGCGGAAGCTATCAGGGAGCTCAAATCCACCGACTTTAAGGAAGTATTCGCGGAAGAGCAGGAGCGGGTAAAGGACTTTGTCAGCGATTGTACCATAGATACGGACCTGGAGATCATGATACCGGACAGCTATGTGGATCATATCACCGAGCGGCTGTCGCTGTACACACAGCTCGATAATATAGAGGATGATGCGGCGCTGGAGGCGTTCAGGCAGCAGCTGGAAGACCGGTTTGGCCCGGTCCCGGTGCAGGTGGAAGACCTGTTCACTACTATCAGGTGCCGGCGTATTGCCAAGCTGCTGGGCTTTGAAAAGCTGTTCCTGAAAAACAATACGCTCAGGCTGTACTTTGTCAGCGACCCGGAATCCTCTTACTTTGAAAGCGCTACCTTTAATAATATTATGAATTTCCTGCAGACCGGCACCAATAAGGCCAGGCTGAAGCAGGTAGGCAAAAATTTTATGCTGATCGTTTCCGATATGAAGAGCATGCAGGAGATCTATGATTTCCTGGACCATATGCAGCATTATCAGTAA
PROTEIN sequence
Length: 1124
MNLQSITGIYANDIHVKEIAAGISLREPKLRVNIKNMIGSNFTFLSHAVWKTAQSNHVFVLPDKEQAAYFQNDFEHISDALDIFYFPDSFKKEGNFHLLNSSNIMLRTEALSKIQDNTHRKVLVTSPEGLFEKVVHHKALTGNMIHIKSGDNLDTDTLLSRLVDLGFRHESFVYEPGQFALRGGILDIYSYGNEHPYRIELFGKEVDSIRLFDPETQLSVKKLVQVSIIPNIETQFSSRDRISILDYLPDNTVFWFRDYEYAMEKLRVLSEKLKDQLVRERSEFEASEEQWVKEMQVEDFEDTDSFIEKLKRRHVINWSGKDMTLDDYPAATIEWQSEEQPVFNRNFQLLIADLQQRTRNNYTCYIFAENARQLERLRSIFEDAQALVDFVPVPISVTKGFIDHKYKLVCYTDHQIFQRFHKYKVKQSYTKGKAITLKALRELQPGDYVTHIDHGVGQFSGLQKIEVNGNMQEAVRIIYRDNDVLYVNINSLHKISKYTGKEGVTPRINKLGSDAWEKLKNKTKKQVKDIATDLIRLYAKRKASHGFAHAPDTYLQVELESSFLYEDTPDQSKAVADVKRDMESPAPMDRLVCGDVGFGKTEVAVRAAFKTVNDSKQAAILVPTTILAYQHYKTFSDRLKDFPVNIDYLNRFKSAKEKKETLKKLEEGKIDIIVGTHALLAKDVKFRDLGLLIIDEEQKFGVAAKEKLRERKSNVDTLTLTATPIPRTLQFSLMSARDLSIINTPPPNRQPIHTELMGFNELAIRDAIYYEVERGGQVYFVHNRVQSLDSMARKLKDLCPDVEFAVAHGQMEGAKLEKVLLDFINHKFDVLVCTNIVESGVDISNANTIFVNNAHQFGLSDLHQLRGRVGRSNKKAFCYLMAPSLLTLPETSRKRLQALEQFNELGSGFQIAMRDLDIRGAGNILGGEQSGFITEIGFDMYQKILAEAIRELKSTDFKEVFAEEQERVKDFVSDCTIDTDLEIMIPDSYVDHITERLSLYTQLDNIEDDAALEAFRQQLEDRFGPVPVQVEDLFTTIRCRRIAKLLGFEKLFLKNNTLRLYFVSDPESSYFESATFNNIMNFLQTGTNKARLKQVGKNFMLIVSDMKSMQEIYDFLDHMQHYQ*