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scnpilot_p_inoc_scaffold_21

Search features with annotation key words

Displaying items 151-180 of 379 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_21_151

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188345..189298
DNA (954bp) protein (318aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AH82_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD55608.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
type I site-specific deoxyribonuclease
scnpilot_p_inoc_scaffold_21_152
RIFOXYD2_FULL_Elusimicrobia_34_15_curated, Elusimicrobia, Bacteria

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189302..189727
DNA (426bp) protein (142aa)
HsdR family type I site-specific deoxyribonuclease; K01153 type I restriction enzyme, R subunit [EC:3.1.21.3] Tax=RIFOXYD2_FULL_Elusimicrobia_34_15_curated
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AH82_9BACT
type I site-specific deoxyribonuclease HsdR family protein
scnpilot_p_inoc_scaffold_21_153
Candidatus Omnitrophus sp. SKK-01, Candidatus Omnitrophus, Omnitrophica, Bacteria

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189804..190997
DNA (1194bp) protein (398aa)
type I site-specific deoxyribonuclease, HsdR family (EC:3.1.21.3)
Type I site-specific deoxyribonuclease, HsdR family n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BY84_NITHN
Restriction endonuclease subunit R {ECO:0000313|EMBL:KJJ85520.1}; TaxID=1609969 species="Bacteria; Omnitrophica; Candidatus Omnitrophus.;" source="Candidatus Omnitrophus sp. SKK-01.;"
scnpilot_p_inoc_scaffold_21_154
R_Omnitrophica_45_10b, Omnitrophica, Bacteria

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191030..191221
DNA (192bp) protein (64aa)
Tax=RIFCSPLOWO2_01_FULL_Omnitrophica_45_10b_curated
scnpilot_p_inoc_scaffold_21_155
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(191704..191901)
DNA (198bp) protein (66aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6E4_PALPW
hypothetical protein Tax=CG_Paludi_01
hypothetical protein
scnpilot_p_inoc_scaffold_21_156
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(191994..193793)
DNA (1800bp) protein (600aa)
AMP-dependent synthetase and ligase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6E5_PALPW rbh
amp-dependent synthetase and ligase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ADQ80289.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter p
scnpilot_p_inoc_scaffold_21_157
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(193838..194608)
DNA (771bp) protein (257aa)
ribonuclease iii (EC:3.1.26.3)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule
Ribonuclease 3 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6E6_PALPW
scnpilot_p_inoc_scaffold_21_158
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(194610..195872)
DNA (1263bp) protein (421aa)
3-oxoacyl-(acyl-carrier-protein) synthase ii (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; P
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6E7_PALPW rbh
scnpilot_p_inoc_scaffold_21_159
Paraprevotella xylaniphila, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(195894..196124)
DNA (231bp) protein (77aa)
Acyl carrier protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6E8_PALPW
acyl carrier protein
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=762982 species="Bacteria; Bacteroidetes; Bacteroidia; Bactero
scnpilot_p_inoc_scaffold_21_160
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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196274..196843
DNA (570bp) protein (190aa)
formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase (EC:2.1.2.2); K11175 phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] Tax=CG_Paludi_01
formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00035DA064
scnpilot_p_inoc_scaffold_21_161
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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196923..198023
DNA (1101bp) protein (367aa)
Ribosome-binding ATPase YchF n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6F0_PALPW rbh
GTP-binding protein ychf; K06942 Tax=CG_Paludi_01
GTP-binding protein ychf
scnpilot_p_inoc_scaffold_21_162
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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198353..202156
DNA (3804bp) protein (1268aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6G6_PALPW rbh
hypothetical protein Tax=CG_Paludi_01
hypothetical protein
scnpilot_p_inoc_scaffold_21_163
unknown

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202162..202851
DNA (690bp) protein (230aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_21_164
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(202848..203933)
DNA (1086bp) protein (362aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T773_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ80567.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludib
scnpilot_p_inoc_scaffold_21_165
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(203958..206288)
DNA (2331bp) protein (777aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=694427 species="Bacteria; Bacteroide
DNA topoisomerase i (EC:5.99.1.2)
DNA topoisomerase 1 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T772_PALPW rbh
scnpilot_p_inoc_scaffold_21_166
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(206532..209345)
DNA (2814bp) protein (938aa)
peptidase m16 domain protein; K07263 zinc protease [EC:3.4.24.-] Tax=CG_Paludi_01
Peptidase M16 domain protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T739_PALPW rbh
peptidase m16 domain-containing protein
scnpilot_p_inoc_scaffold_21_167
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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209442..209981
DNA (540bp) protein (180aa)
GAF domain-containing protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T740_PALPW
gaf domain-containing protein
GAF domain-containing protein {ECO:0000313|EMBL:ADQ80534.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propion
scnpilot_p_inoc_scaffold_21_168
GWF2_Bacteroidetes_49_14_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(209985..212087)
DNA (2103bp) protein (701aa)
TonB-dependent receptor plug id=4274671 bin=GWF2_Bacteroidetes_49_14 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab) rbh
TonB-dependent receptor plug; K02014 iron complex outermembrane recepter protein Tax=GWF2_Bacteroidetes_49_14_curated
hypothetical protein
scnpilot_p_inoc_scaffold_21_169
GWF2_Bacteroidetes_49_14_curated, Bacteroidia, Bacteroidetes, Bacteria

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212191..213837
DNA (1647bp) protein (549aa)
peptidase u34 dipeptidase Tax=GWF2_Bacteroidetes_49_14_curated
Peptidase U34 dipeptidase id=4274669 bin=GWF2_Bacteroidetes_49_14 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab) rbh
peptidase u34 dipeptidase
scnpilot_p_inoc_scaffold_21_170
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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213933..215453
DNA (1521bp) protein (507aa)
gmp synthase (glutamine-hydrolyzing) (EC:6.3.5.2)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T4Q4_PALPW rbh
scnpilot_p_inoc_scaffold_21_171
Bacteroides stercoris CAG:120, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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215458..216309
DNA (852bp) protein (284aa)
Hydrolase TatD family n=1 Tax=Bacteroides stercoris CAG:120 RepID=R6A3Z2_9BACE
Hydrolase TatD family {ECO:0000313|EMBL:CDA46543.1}; TaxID=1263053 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroid
hypothetical protein
scnpilot_p_inoc_scaffold_21_172
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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216585..217364
DNA (780bp) protein (260aa)
Transporter, MotA/TolQ/ExbB proton channel family protein n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5D1B7_BACPM rbh
biopolymer transport protein Tax=CG_Paludi_01
biopolymer transport protein
scnpilot_p_inoc_scaffold_21_173
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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217373..217846
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Bacteroides clarus CAG:160 RepID=R6L2I7_9BACE
hypothetical protein Tax=CG_Paludi_01
hypothetical protein
scnpilot_p_inoc_scaffold_21_174
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

217874..218455
DNA (582bp) protein (194aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7ADD6_9PORP
hypothetical protein Tax=CG_Paludi_01
hypothetical protein
scnpilot_p_inoc_scaffold_21_175
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

218455..218925
DNA (471bp) protein (157aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=I8XLG8_9BACE
hypothetical protein Tax=CG_Paludi_01
biopolymer transporter ExbD
scnpilot_p_inoc_scaffold_21_176
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


219160..222594
DNA (3435bp) protein (1145aa)
isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0
Isoleucine--tRNA ligase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T522_PALPW rbh
scnpilot_p_inoc_scaffold_21_177
Muricauda ruestringensis, Muricauda, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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222702..224915
DNA (2214bp) protein (738aa)
LamG domain protein jellyroll fold domain protein n=1 Tax=Muricauda ruestringensis (strain DSM 13258 / LMG 19739 / B1) RepID=G2PN11_MURRD
LamG domain-containing protein jellyroll fold domain-containing protein
LamG domain protein jellyroll fold domain protein {ECO:0000313|EMBL:AEM72359.1}; Flags: Precursor;; TaxID=886377 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae;
scnpilot_p_inoc_scaffold_21_178
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

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225016..228516
DNA (3501bp) protein (1167aa)
alpha-N-acetylglucosaminidase (EC:3.2.1.50); K01205 alpha-N-acetylglucosaminidase [EC:3.2.1.50] Tax=GWE2_Bacteroidetes_40_63_curated
Uncharacterized protein id=2103845 bin=GWD2_Bacteroidetes_40_43 species=Bacteroides nordii genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
nagLU; putative alpha-N-acetylglucosaminidase
scnpilot_p_inoc_scaffold_21_179
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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228884..233197
DNA (4314bp) protein (1438aa)
Uncharacterized protein n=1 Tax=Alloprevotella rava F0323 RepID=G5GD37_9BACT
Endonuclease/exonuclease/phosphatase Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_21_180
unknown

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233207..233374
DNA (168bp) protein (56aa)

This feature has no annotations

Displaying items 151-180 of 379 in total

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