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scnpilot_p_inoc_scaffold_898_18

Organism: SCNpilot_P_inoc_Paludibacter_47_17

near complete RP 52 / 55 BSCG 51 / 51 ASCG 13 / 38
Location: comp(15901..16494)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma subunit, ECF family n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T831_PALPW similarity UNIREF
DB: UNIREF100
  • Identity: 75.6
  • Coverage: 197.0
  • Bit_score: 304
  • Evalue 8.10e-80
  • rbh
ECF subfamily RNA polymerase sigma-70 factor similarity KEGG
DB: KEGG
  • Identity: 75.6
  • Coverage: 197.0
  • Bit_score: 304
  • Evalue 2.30e-80
RNA polymerase, sigma subunit, ECF family {ECO:0000313|EMBL:ADQ80875.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludiba similarity UNIPROT
DB: UniProtKB
  • Identity: 75.6
  • Coverage: 197.0
  • Bit_score: 304
  • Evalue 1.10e-79

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Taxonomy

Paludibacter propionicigenes → Paludibacter → Bacteroidales → Bacteroidia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 594
ATGAAAACACTGGATCAACTCGCCGATGATCAATTGGTAAGTTTGTACGAGCAGGGAAACAATACGGCATTTGAAGTTTTAATGATGCGTTACAAGTCGAAGGTATATGCCTATATCTTTCAGATTGTACGCGACCGCGAACTCACCGAGGATATCTTTCAGGATACCTTCATTAAAGCCATCGTCACCATACAGCAGGGCCGTTATTCCGAAACCGGCAAGTTTCTGGGCTGGGTGAACCGTATTGCGCATAATCTTATTATCGATCATTTCCGGAAAGAAAAAAACGAAAATACGATTTCGGCCGATGCTTACGAATACGATATTGTGAACAGTAACAAGTTGTCCGATCTGAGTATTGAAGATATTCTGTCGAACGAACAGGTGCTGAATGATGTGGTTCGCATGGTCGCTTTTTTGCCTCCGGTACAACAAGAAGTGGTGCGGATGCGCTTTTTTGAGGATCTCAGTTTTAAGGAAATTGCCGAGAAAACACAGGTTAGCATCAATACGGCGTTGGGGCGAATGCGCTACGCATTGCTGAATATGCGTAAGATGGCAGCCGAAAAAGATGTGTATCTGGAGTTAAAATGA
PROTEIN sequence
Length: 198
MKTLDQLADDQLVSLYEQGNNTAFEVLMMRYKSKVYAYIFQIVRDRELTEDIFQDTFIKAIVTIQQGRYSETGKFLGWVNRIAHNLIIDHFRKEKNENTISADAYEYDIVNSNKLSDLSIEDILSNEQVLNDVVRMVAFLPPVQQEVVRMRFFEDLSFKEIAEKTQVSINTALGRMRYALLNMRKMAAEKDVYLELK*