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scnpilot_p_inoc_scaffold_34_23

Organism: SCNpilot_P_inoc_Niastella_45_30

near complete RP 53 / 55 MC: 1 BSCG 50 / 51 MC: 1 ASCG 13 / 38
Location: comp(37266..37829)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-24 subunit ECF subfamily n=1 Tax=Odoribacter splanchnicus CAG:14 RepID=R6FDF7_9PORP similarity UNIREF
DB: UNIREF100
  • Identity: 33.9
  • Coverage: 171.0
  • Bit_score: 102
  • Evalue 3.40e-19
RNA polymerase sigma-24 subunit ECF subfamily {ECO:0000313|EMBL:CDB06966.1}; TaxID=1263090 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Odoribacter; environmental similarity UNIPROT
DB: UniProtKB
  • Identity: 33.9
  • Coverage: 171.0
  • Bit_score: 102
  • Evalue 4.80e-19
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 30.2
  • Coverage: 169.0
  • Bit_score: 97
  • Evalue 4.00e-18

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Taxonomy

Odoribacter splanchnicus CAG:14 → Odoribacter → Bacteroidales → Bacteroidia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 564
ATGGAAACCTGTGTTACCCCGGAGGTGTTGAGTTTACCTGCTGCTGTCAACGACAATGCCTTTTCCGAACTGTATGAAAAATATTACCAACAGCTCTTGTTTTTTGCGGTGAAATGCCTGGGCTCTACCGAAGGAGCTGCTGATGTAGTGCAGGATTGCTTTATAAAGCTATGGCAACTTCCCAGGAGCCTTAGTGAGATCTCATCCATCCGAAACTACCTGTATACAATGGTTCGCAACCGCTGTACCGATCTGCTGCATAGCAAAACAAGAGTCAGCAAACTGGAGCAGGAATGGCAGCTCTATCAGGAAAATGAGCCGGCACCCTCAGAGCTTTTAGCCATTGACCGCGATATCCTGCCTGAAATCCTTTCCGCTATGAAAAAACTTCCTCCGCGCATGCAGGAGGTATTCCGTCTCTACTACCTGGAAGGTAAATCGTATGCAGAAATCGGCGAACTGCTGCACACGCAACCCGGCACGGTAAGGAATCAACGTAATAAAGCTTTACAGAACATTCAAAAATTATTGCAGAAACAGGCATTGCTTTCCGATAAAAATTAA
PROTEIN sequence
Length: 188
METCVTPEVLSLPAAVNDNAFSELYEKYYQQLLFFAVKCLGSTEGAADVVQDCFIKLWQLPRSLSEISSIRNYLYTMVRNRCTDLLHSKTRVSKLEQEWQLYQENEPAPSELLAIDRDILPEILSAMKKLPPRMQEVFRLYYLEGKSYAEIGELLHTQPGTVRNQRNKALQNIQKLLQKQALLSDKN*