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scnpilot_p_inoc_scaffold_425_13

Organism: SCNpilot_P_inoc_Niastella_39_19

near complete RP 52 / 55 MC: 2 BSCG 50 / 51 ASCG 13 / 38
Location: 19248..20123

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQK7_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 75.9
  • Coverage: 291.0
  • Bit_score: 435
  • Evalue 5.90e-119
RpoD subfamily RNA polymerase sigma-70 subunit similarity KEGG
DB: KEGG
  • Identity: 75.9
  • Coverage: 291.0
  • Bit_score: 435
  • Evalue 1.70e-119
RNA polymerase, sigma 70 subunit, RpoD subfamily {ECO:0000313|EMBL:AEW03254.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" sour similarity UNIPROT
DB: UniProtKB
  • Identity: 75.9
  • Coverage: 291.0
  • Bit_score: 435
  • Evalue 8.30e-119

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Taxonomy

Niastella koreensis → Niastella → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 876
ATGAGTATGCGCCAGCTGAAAATAACGAAATCGATCACGAACCGGGAAAGCCAAAGTTTGGAGAAATATCTCCAGGAAATAGGCCGGGTGGAATTAATTACTGCCGAAGAAGAAGTGGTTCTTGCCGGATTAATAAAAAAAGGCGATCAAAAAGCATTAGACAGGCTAACGAAAGCCAACCTACGATTTGTGGTATCTGTAGCTAAACAATACCAAAACCAGGGCCTTACCCTTCCCGATCTCATTAATGAGGGAAATCTTGGCCTTATTAAGGCGGCTCAAAAATTTGATGAAACCCGTGGCTTTAAATTTATTTCCTATGCGGTGTGGTGGATACGCCAAAGTATTTTACAGGCGCTGGCCGAACAATCCCGCATAGTGAGGCTGCCTTTGAATAAGGTAGGGTTAACCAATCAAATAAGCAAAGCATACGCAAAATTAGAACAGGAGTTTGAAAGGGAACCCACCCCGGAAGAAATTTCAGATTTATTGGGAATAGATGTAGAAGAAATTTCAGCCACATTAAGAATAGCTGCCCGGCATGTGAGCATGGATCAGCCCATGGGCGAAAGCGATGAAGGCACCCTGGGGGATATGCTTATAAATCATAATGCCGTAAATACGGATGATGCATTGGCAGTAAAAGCTTCTTTACAAACTGAAATTGAACGGTCTTTAAGTACGTTAACACCACGCCAAAGAGAAGTATTGATGTGTTTTTTTGGTTTGGGTATCGATCATCCCCTGAGTTTAGAAGATATAGGAAACCGCTATCATCTTACCCGGGAAAGGGTGAGGCAAATAAAAGACAATGCAATAACAAAACTCCGAAGCACTTCACAAAGCGCATTATTAAGAGGATACCTGGGCGCTTAA
PROTEIN sequence
Length: 292
MSMRQLKITKSITNRESQSLEKYLQEIGRVELITAEEEVVLAGLIKKGDQKALDRLTKANLRFVVSVAKQYQNQGLTLPDLINEGNLGLIKAAQKFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNKVGLTNQISKAYAKLEQEFEREPTPEEISDLLGIDVEEISATLRIAARHVSMDQPMGESDEGTLGDMLINHNAVNTDDALAVKASLQTEIERSLSTLTPRQREVLMCFFGLGIDHPLSLEDIGNRYHLTRERVRQIKDNAITKLRSTSQSALLRGYLGA*