ggKbase home page

scnpilot_p_inoc_scaffold_175

Search features with annotation key words

Displaying items 181-206 of 206 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_175_181
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(209292..212540)
DNA (3249bp) protein (1083aa)
BNR/Asp-box repeat protein n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F5I3_ACIC5 rbh
BNR/Asp-box repeat protein {ECO:0000313|EMBL:ACO32902.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strai
BNR/Asp-box repeat-containing protein
scnpilot_p_inoc_scaffold_175_182
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(212649..213119)
DNA (471bp) protein (157aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadal
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002F24AB0
deoxycytidylate deaminase
scnpilot_p_inoc_scaffold_175_183
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(213220..213501)
DNA (282bp) protein (94aa)
membrane protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00036788D5
Uncharacterized protein {ECO:0000313|EMBL:KFC75509.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
signal peptide
scnpilot_p_inoc_scaffold_175_184
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(213593..214339)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WQZ3_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC16808.1}; TaxID=926571 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera v
scnpilot_p_inoc_scaffold_175_185
Burkholderia sp. CCGE1002, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(214399..215187)
DNA (789bp) protein (263aa)
hypothetical protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI00036D3719 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG17486.1}; TaxID=640511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. (
scnpilot_p_inoc_scaffold_175_186
Burkholderia sp. Ch1-1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

215300..216559
DNA (1260bp) protein (420aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2IW62_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EIF34964.1}; TaxID=243261 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. C
hypothetical protein
scnpilot_p_inoc_scaffold_175_187
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

216606..217061
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000367F357
Activator of HSP90 ATPase {ECO:0000313|EMBL:GAN45005.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiiba
Activator of Hsp90 ATPase 1 family protein
scnpilot_p_inoc_scaffold_175_188
Burkholderia glathei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

217109..217786
DNA (678bp) protein (226aa)
UPI0003D009E5 related cluster n=1 Tax=unknown RepID=UPI0003D009E5 rbh
FOG: WD40-like repeat {ECO:0000313|EMBL:CDY75149.1}; Uncharacterized protein {ECO:0000313|EMBL:KDR42695.1}; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkhold
SMP-30/Gluconolaconase/LRE-like region family protein
scnpilot_p_inoc_scaffold_175_189
Meiothermus silvanus, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(217916..218905)
DNA (990bp) protein (330aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=526227 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiother
Isoprenyl transferase n=1 Tax=Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) RepID=D7B9V2_MEISD rbh
undecaprenyl diphosphate synthase
scnpilot_p_inoc_scaffold_175_190
unknown

Not on your lists

comp(218902..219036)
DNA (135bp) protein (45aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_175_191
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(219033..220580)
DNA (1548bp) protein (516aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO
GMP synthase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B59169
GMP synthase
scnpilot_p_inoc_scaffold_175_192
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(220725..222182)
DNA (1458bp) protein (486aa)
inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205)
inosine 5''''-monophosphate dehydrogenase n=1 Tax=Dyella ginsengisoli RepID=UPI00034A3719
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:
scnpilot_p_inoc_scaffold_175_193
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(222250..223107)
DNA (858bp) protein (286aa)
5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase (EC:1.5.1.5 3.5.4.9)
Bifunctional protein FolD n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WID3_9GAMM rbh
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanoba
scnpilot_p_inoc_scaffold_175_194
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

223300..223593
DNA (294bp) protein (98aa)
cell division protein DedD n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002D57A33
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADV27252.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pse
scnpilot_p_inoc_scaffold_175_195
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(223608..224735)
DNA (1128bp) protein (376aa)
Molybdopterin biosynthesis protein MoeB n=1 Tax=Stenotrophomonas maltophilia SKK35 RepID=M5CYD5_STEMA
Molybdopterin biosynthesis protein MoeB {ECO:0000313|EMBL:KGM56333.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Ly
molybdopterin biosynthesis protein MoeB
scnpilot_p_inoc_scaffold_175_196
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(224767..226008)
DNA (1242bp) protein (414aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036CEF88
Uncharacterized protein {ECO:0000313|EMBL:KFN45708.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas compost
moeA1; molybdopterin biosynthesis protein MoeA
scnpilot_p_inoc_scaffold_175_197
Candidatus Accumulibacter sp. BA-92, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(225977..226684)
DNA (708bp) protein (236aa)
Molybdenum cofactor guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316, ECO:0000256|SAAS:SAAS00049907}; Short=MoCo guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316};; EC=2.7.7.77 {ECO:0000256|HA
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035DD644
molybdopterin-guanine dinucleotide biosynthesis protein A
scnpilot_p_inoc_scaffold_175_198
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(226668..228068)
DNA (1401bp) protein (467aa)
GTPase Der n=1 Tax=Rhodanobacter sp. 115 RepID=I4VRV5_9GAMM
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobac
GTPase Der
scnpilot_p_inoc_scaffold_175_199
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(228221..229441)
DNA (1221bp) protein (407aa)
Outer membrane protein assembly factor BamB n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WID1_9GAMM rbh
Outer membrane protein assembly factor BamB {ECO:0000256|HAMAP-Rule:MF_00923}; Flags: Precursor;; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadacea
membrane protein
scnpilot_p_inoc_scaffold_175_200
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(229438..230103)
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VX37_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91778.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter s
hypothetical protein
scnpilot_p_inoc_scaffold_175_201
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(230296..231255)
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VX36_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHX13081.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.
scnpilot_p_inoc_scaffold_175_202
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(231252..232061)
DNA (810bp) protein (270aa)
Pilus biogenesis/stability type IV, PilW n=2 Tax=mine drainage metagenome RepID=T1CD45_9ZZZZ
pilus assembly protein PilW
Pilus assembly protein PilW {ECO:0000313|EMBL:AHX13080.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningen
scnpilot_p_inoc_scaffold_175_203

Not on your lists

comp(232051..233181)
DNA (1131bp) protein (377aa)
Ribosomal RNA large subunit methyltransferase N (Fragment) n=1 Tax=mine drainage metagenome RepID=T1BTR2_9ZZZZ rbh
Ribosomal RNA large subunit methyltransferase N {ECO:0000313|EMBL:EQD73252.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drain
50S rRNA methyltransferase
scnpilot_p_inoc_scaffold_175_204
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(233200..233628)
DNA (429bp) protein (143aa)
nucleoside-diphosphate kinase (EC:2.7.4.6); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] Tax=GWF1_Xanthomonadales_69_6_curated
nucleoside diphosphate kinase (EC:2.7.4.6)
Nucleoside diphosphate kinase id=2715433 bin=GWF1_Xanthomonadales_69_6 species=Laribacter hongkongensis genus=Laribacter taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
scnpilot_p_inoc_scaffold_175_205

Not on your lists

233849..234469
DNA (621bp) protein (207aa)
Transcriptional regulator, TetR family protein n=3 Tax=mine drainage metagenome RepID=T1CM34_9ZZZZ
Transcriptional regulator, TetR family protein {ECO:0000313|EMBL:EQD69419.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
transcriptional regulator
scnpilot_p_inoc_scaffold_175_206
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

234640..237099
DNA (2460bp) protein (820aa)
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIC4_9GAMM
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:KGI78301.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagr
3-hydroxyacyl-CoA dehydrogenase
Displaying items 181-206 of 206 in total

View Taxonomy