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scnpilot_p_inoc_scaffold_135_54

Organism: SCNpilot_P_inoc_Flavobacterium_40_86

near complete RP 52 / 55 MC: 2 BSCG 50 / 51 ASCG 15 / 38 MC: 1
Location: 60641..61504

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor rpoD n=1 Tax=Flavobacterium rivuli RepID=UPI00035D5F51 similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 287.0
  • Bit_score: 555
  • Evalue 2.30e-155
  • rbh
RNA polymerase sigma factor rpoD {ECO:0000313|EMBL:KGO87657.1}; TaxID=1121895 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobact similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 287.0
  • Bit_score: 555
  • Evalue 3.20e-155
rpoD; RNA polymerase sigma-70 factor RpoD similarity KEGG
DB: KEGG
  • Identity: 99.7
  • Coverage: 287.0
  • Bit_score: 554
  • Evalue 1.90e-155
  • rbh

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Taxonomy

Flavobacterium rivuli → Flavobacterium → Flavobacteriales → Flavobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 864
ATGAGACAACTTAAAATTACCAAGCAGGTAACTAACCGTGAAACTGCTTCCTTAGACAAGTACCTACAAGAAATTGGAAAAGTTGACTTGATTACCGCCGATGAAGAGGTAGAATTAGCACAAAGAATTAAAGCCGGAGACCAGAGAGCCTTAGAGAAATTAACAAAGGCCAACCTGCGTTTTGTGGTATCGGTTGCTAAACAGTATCAGAATCAAGGTTTAACTTTACCCGATTTGATTAATGAAGGTAACTTGGGGTTAATTAAAGCTGCACAACGTTTTGACGAAACACGTGGTTTCAAATTCATTTCGTATGCGGTTTGGTGGATTCGTCAGTCTATTTTACAGGCTTTGGCAGAACAATCTCGTATTGTTAGATTACCATTAAACAAAATTGGCTCTATCAATAAAATCAACAAGATGTATGCTTTATTAGAGCAATCTAATGAACGTGCTCCTTCTGCTGAGGAAATTGCAAAAGAACTGGACATGACTGTTAATGATGTTAAGGAGAGTATGAAAAACTCCGGTCGTCATTTATCCATGGATGCTCCGTTAGTGGAAGGTGAAGACTCTAATCTTTATGACGTATTACGTTCCGGTGAATCACCAAATCCTGACAGGGAACTGATTCACGAATCTTTACGTACAGAAATCGAAAGAGCTCTGGAAACCTTAACACCTCGTGAGGCTGACGTAGTAAGATTGTATTTCGGATTAGGTGATCAGCACCCGATGACATTGGAAGAAATCGGAGAAACTTTTGATTTAACCCGTGAGCGTGTACGCCAGATTAAAGAAAAAGCGATCAGAAGATTAAAACATACCTCCAGAAGTAAGATTCTAAAAACTTATTTAGGATAA
PROTEIN sequence
Length: 288
MRQLKITKQVTNRETASLDKYLQEIGKVDLITADEEVELAQRIKAGDQRALEKLTKANLRFVVSVAKQYQNQGLTLPDLINEGNLGLIKAAQRFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNKIGSINKINKMYALLEQSNERAPSAEEIAKELDMTVNDVKESMKNSGRHLSMDAPLVEGEDSNLYDVLRSGESPNPDRELIHESLRTEIERALETLTPREADVVRLYFGLGDQHPMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKILKTYLG*