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scnpilot_p_inoc_scaffold_311_145

Organism: SCNpilot_P_inoc_Flavobacterium_40_86

near complete RP 52 / 55 MC: 2 BSCG 50 / 51 ASCG 15 / 38 MC: 1
Location: comp(144378..144971)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YDW3_9SPHI similarity UNIREF
DB: UNIREF100
  • Identity: 62.6
  • Coverage: 198.0
  • Bit_score: 258
  • Evalue 5.10e-66
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EHQ24303.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacte similarity UNIPROT
DB: UniProtKB
  • Identity: 62.6
  • Coverage: 198.0
  • Bit_score: 258
  • Evalue 7.20e-66
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 47.9
  • Coverage: 192.0
  • Bit_score: 192
  • Evalue 9.70e-47

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Taxonomy

Mucilaginibacter paludis → Mucilaginibacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 594
ATGCATGTCTTAAGCTCCATAGATGAAAGGGAACTTCTAATCAGGTTAGGAGAAGAAACCGCGTTTAATACCTTATATGATCTTTATTCAAACCGAATCTACAACCGCTTATTAAAGCTTACCCAATCAGAACAGCTCGCAGACGAACTCTTACAGGACACTTTTGTTATACTCTGGAATAAACGAGATACCATTAATCCCGACCTATCCATAAAATCCTGGCTTTATAAGGTAGCTGAAAATGAGGTTTATCAACTTTACCGGAAAATTGCACGGGATAAAAAGCTACAGGAGCATATTGTTTCAACTTTTTTAGAAAGTTACTCCCACACCGAAGAAGGCATTTACCTGAAAGAAAGTCAGGAACTACTGGACAAAGCGATGGATCAGTTATCACCACAGCGCAGGCAGGCTTTTAAGTTATGTAGATTAGATGGTATGAGCTACCAACAGGCAGCAGAAATTATGGGGGTATCAACATCAACAGTTAGTAACCATTTGGTGCAAGCGACCAGTATTGTACGCAAGTACATATTCCAGTCACAAGAGCGAATGGCTATCATAATTTCACTTTTAATGCTTCAAAAATATTAG
PROTEIN sequence
Length: 198
MHVLSSIDERELLIRLGEETAFNTLYDLYSNRIYNRLLKLTQSEQLADELLQDTFVILWNKRDTINPDLSIKSWLYKVAENEVYQLYRKIARDKKLQEHIVSTFLESYSHTEEGIYLKESQELLDKAMDQLSPQRRQAFKLCRLDGMSYQQAAEIMGVSTSTVSNHLVQATSIVRKYIFQSQERMAIIISLLMLQKY*