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scnpilot_p_inoc_scaffold_469_15

Organism: SCNpilot_P_inoc_Novosphingobium_62_280

near complete RP 50 / 55 MC: 1 BSCG 51 / 51 ASCG 11 / 38
Location: comp(9559..10131)

Top 3 Functional Annotations

Value Algorithm Source
FecI sigma-24 factor n=1 Tax=Sphingobium baderi LL03 RepID=T0GXX9_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 190.0
  • Bit_score: 364
  • Evalue 6.40e-98
  • rbh
FecI sigma-24 factor {ECO:0000313|EMBL:KEZ15188.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuy similarity UNIPROT
DB: UniProtKB
  • Identity: 99.5
  • Coverage: 190.0
  • Bit_score: 363
  • Evalue 2.60e-97
RNA polymerase ECF-type sigma factor similarity KEGG
DB: KEGG
  • Identity: 55.1
  • Coverage: 187.0
  • Bit_score: 208
  • Evalue 2.20e-51

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Taxonomy

Sphingobium yanoikuyae → Sphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 573
GTGAGTCTGGATCTCCAGGCGTGTTCGGACGGTGAACTAGCGGCACTGACGCTTGCCGGTCGGCAGTCGGCTTTCGCCGAGATTATGCGTCGGCACCAGACAGCGATATTTCGACTGGTGCGCGGCCTGGTCGGGAATGCCGAGGAAGCACTTGATCTCACGCAGGACTGCTTTGTATCCGCGTTCAGCCATCTGCGGAAATATGATGGTGCGCGTCCGTTGCGCGCCTGGCTATCCCGGATCGCGATTAACAAATGTCGCGATTGGCGCCGCCGCCAGAGGGTGCGGCAGCTCTTCACATTTGGCTCCGCGCCGTCGGATGATGAGATTGAGCAAGTGCCGGATGACGCACCCTCCGCACATGCCAGTGCTGAATCGAAAATAGAGGTGGAGCGACTGTCGGCGGCGATCAGCGCATTGCCTGCCACGTTGCGTGAAGTCCTGATGCTCAGGACCGTCGAAGGGCTCAGTCAATCAGAGGCCGCCAAAGCGCTTTCCGTCAGTAGCAAGGCTGTGGAGACGCGCCTGTATCGCGCGCGCGCGCGCCTCGCAGAAATACTCGCTGAGGAATGA
PROTEIN sequence
Length: 191
VSLDLQACSDGELAALTLAGRQSAFAEIMRRHQTAIFRLVRGLVGNAEEALDLTQDCFVSAFSHLRKYDGARPLRAWLSRIAINKCRDWRRRQRVRQLFTFGSAPSDDEIEQVPDDAPSAHASAESKIEVERLSAAISALPATLREVLMLRTVEGLSQSEAAKALSVSSKAVETRLYRARARLAEILAEE*