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scnpilot_dereplicated_Eukaryote_unknown_16

SCNpilot_P_inoc_unknown_62_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.52 Longest contig: 30.22 Kbp Bin length: 20.45 Mbp GC content: 62.06 %
Contigs count: 2836 Features count: 12230 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 39 / 55 MC: 26 BSCG 17 / 51 MC: 6 ASCG 21 / 38 MC: 8

Description

not clear on coverage ESOM, based on abawaca

Displaying items 201-250 of 2836 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_4886 9 7717 bp 58.96 4.43 70.56
scnpilot_p_inoc_scaffold_3967 9 8849 bp 59.80 4.80 79.77
scnpilot_p_inoc_scaffold_1631 9 18199 bp 61.68 4.21 71.58
scnpilot_p_inoc_scaffold_3457 9 9765 bp 59.83 4.56 83.10
scnpilot_p_inoc_scaffold_2249 9 13628 bp 56.19 4.51 45.33
scnpilot_p_inoc_scaffold_3731 8 9214 bp 59.72 4.04 62.97
scnpilot_p_inoc_scaffold_5700 8 6949 bp 56.43 4.19 57.25
scnpilot_p_inoc_scaffold_5189 8 7406 bp 58.25 4.37 71.17
scnpilot_p_inoc_scaffold_8198 8 5390 bp 59.20 4.59 62.78
scnpilot_p_inoc_scaffold_3225 8 11156 bp 62.15 4.88 73.74
scnpilot_p_inoc_scaffold_2779 8 11475 bp 57.24 4.34 72.18
scnpilot_p_inoc_scaffold_3484
Domain: Bacteria (50%)
8 9697 bp 58.32 4.83 83.75
scnpilot_p_inoc_scaffold_4661
Domain: Eukaryota (50%)
8 12711 bp 59.32 4.91 63.11
scnpilot_p_inoc_scaffold_7517
Species: Pusillimonas sp. T7-7 (100%)
8 5741 bp 65.70 3.40 90.40
scnpilot_p_inoc_scaffold_5712 8 6942 bp 55.81 4.75 84.10
scnpilot_p_inoc_scaffold_5969 8 12363 bp 59.44 4.37 70.06
scnpilot_p_inoc_scaffold_5970 8 6715 bp 52.93 4.51 47.94
scnpilot_p_inoc_scaffold_1667 8 17783 bp 60.31 4.10 83.44
scnpilot_p_inoc_scaffold_5204 8 7391 bp 59.57 4.26 51.96
scnpilot_p_inoc_scaffold_9286 8 7422 bp 58.35 4.59 54.16
scnpilot_p_inoc_scaffold_2791 8 11437 bp 57.30 4.12 57.31
scnpilot_p_inoc_scaffold_4672 8 7948 bp 56.64 4.02 81.64
scnpilot_p_inoc_scaffold_6083 8 6636 bp 58.74 3.64 76.94
scnpilot_p_inoc_scaffold_1677 8 17693 bp 66.74 4.72 89.39
scnpilot_p_inoc_scaffold_5216 8 7382 bp 58.97 3.76 79.37
scnpilot_p_inoc_scaffold_3250 8 10209 bp 64.15 4.64 75.43
scnpilot_p_inoc_scaffold_4695 8 7920 bp 56.74 4.13 71.52
scnpilot_p_inoc_scaffold_3263 8 10175 bp 63.22 4.82 88.33
scnpilot_p_inoc_scaffold_4953 8 7648 bp 63.89 4.08 82.18
scnpilot_p_inoc_scaffold_11337 8 4288 bp 59.68 4.72 81.37
scnpilot_p_inoc_scaffold_10258 8 5444 bp 59.46 4.96 72.35
scnpilot_p_inoc_scaffold_8244 8 5368 bp 57.45 4.30 81.54
scnpilot_p_inoc_scaffold_3015 8 10721 bp 60.96 4.62 77.37
scnpilot_p_inoc_scaffold_3784 8 9134 bp 62.34 4.04 86.54
scnpilot_p_inoc_scaffold_4961 8 7638 bp 59.06 5.15 66.46
scnpilot_p_inoc_scaffold_3017 8 10711 bp 57.56 4.20 75.06
scnpilot_p_inoc_scaffold_3530 8 9615 bp 62.32 4.20 70.80
scnpilot_p_inoc_scaffold_2827 8 11295 bp 58.26 4.69 75.64
scnpilot_p_inoc_scaffold_6115 8 6608 bp 64.13 4.86 81.31
scnpilot_p_inoc_scaffold_4964 8 7635 bp 56.92 4.13 71.51
scnpilot_p_inoc_scaffold_5244 8 7355 bp 54.52 4.32 86.68
scnpilot_p_inoc_scaffold_6629
Domain: Metazoa (50%)
8 6248 bp 58.50 4.90 65.83
scnpilot_p_inoc_scaffold_2833
Domain: Bacteria (50%)
8 13611 bp 65.54 4.99 85.83
scnpilot_p_inoc_scaffold_4716 8 7889 bp 54.06 4.03 56.47
scnpilot_p_inoc_scaffold_3035 8 10662 bp 58.22 4.74 62.94
scnpilot_p_inoc_scaffold_4724 8 7879 bp 63.07 5.03 80.34
scnpilot_p_inoc_scaffold_5263 8 13129 bp 61.98 5.21 61.97
scnpilot_p_inoc_scaffold_4218 8 8498 bp 61.69 4.41 87.13
scnpilot_p_inoc_scaffold_7843
Domain: Metazoa (50%)
8 6164 bp 54.54 4.09 51.98
scnpilot_p_inoc_scaffold_2597 8 12141 bp 59.12 4.52 80.70
Displaying items 201-250 of 2836 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.