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scnpilot_dereplicated_Eukaryote_unknown_16

SCNpilot_P_inoc_unknown_62_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.52 Longest contig: 30.22 Kbp Bin length: 20.45 Mbp GC content: 62.06 %
Contigs count: 2836 Features count: 12230 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 39 / 55 MC: 26 BSCG 17 / 51 MC: 6 ASCG 21 / 38 MC: 8

Description

not clear on coverage ESOM, based on abawaca

Displaying items 151-200 of 2836 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_4722 9 16194 bp 63.45 4.17 68.66
scnpilot_p_inoc_scaffold_8267 9 5362 bp 58.39 3.25 53.82
scnpilot_p_inoc_scaffold_2590 9 12152 bp 59.13 4.75 79.47
scnpilot_p_inoc_scaffold_2081 9 14574 bp 64.27 4.41 82.09
scnpilot_p_inoc_scaffold_2337 9 13233 bp 61.61 4.47 75.52
scnpilot_p_inoc_scaffold_7849 9 5578 bp 60.40 4.33 77.61
scnpilot_p_inoc_scaffold_3050 9 10635 bp 57.48 4.01 61.72
scnpilot_p_inoc_scaffold_6404 9 9680 bp 56.42 4.37 64.09
scnpilot_p_inoc_scaffold_4486 9 8176 bp 55.20 4.16 74.49
scnpilot_p_inoc_scaffold_2607 9 12093 bp 57.78 4.49 78.17
scnpilot_p_inoc_scaffold_4489 9 8173 bp 61.97 4.15 59.65
scnpilot_p_inoc_scaffold_4492 9 8170 bp 59.36 4.44 76.12
scnpilot_p_inoc_scaffold_2883 9 11116 bp 59.83 5.02 78.40
scnpilot_p_inoc_scaffold_2119 9 14331 bp 56.94 4.64 72.68
scnpilot_p_inoc_scaffold_2888 9 11094 bp 60.44 4.92 67.96
scnpilot_p_inoc_scaffold_2636 9 11978 bp 59.28 4.40 68.35
scnpilot_p_inoc_scaffold_3344 9 9995 bp 57.09 4.28 59.76
scnpilot_p_inoc_scaffold_2641 9 11967 bp 57.16 4.10 74.38
scnpilot_p_inoc_scaffold_1779 9 16720 bp 56.55 4.40 52.86
scnpilot_p_inoc_scaffold_4781 9 7832 bp 60.52 4.69 83.27
scnpilot_p_inoc_scaffold_1784 9 16693 bp 60.16 4.36 71.31
scnpilot_p_inoc_scaffold_2399 9 12900 bp 57.36 4.65 62.63
scnpilot_p_inoc_scaffold_2912 9 11033 bp 54.81 4.02 77.39
scnpilot_p_inoc_scaffold_11182 9 6668 bp 60.60 4.86 74.10
scnpilot_p_inoc_scaffold_9415 9 4890 bp 55.40 3.83 59.39
scnpilot_p_inoc_scaffold_3880 9 8975 bp 57.95 4.03 71.06
scnpilot_p_inoc_scaffold_2668 9 11864 bp 57.48 4.36 60.89
scnpilot_p_inoc_scaffold_2414 9 12824 bp 58.81 4.30 68.82
scnpilot_p_inoc_scaffold_2677 9 11829 bp 59.06 4.08 68.81
scnpilot_p_inoc_scaffold_1558 9 19035 bp 61.54 4.33 74.72
scnpilot_p_inoc_scaffold_4562 9 8085 bp 66.42 4.58 76.99
scnpilot_p_inoc_scaffold_6997 9 12776 bp 57.99 4.37 71.43
scnpilot_p_inoc_scaffold_1567 9 18924 bp 62.79 4.46 74.03
scnpilot_p_inoc_scaffold_8880 9 5109 bp 54.96 4.67 60.83
scnpilot_p_inoc_scaffold_3397 9 9883 bp 60.85 4.07 78.68
scnpilot_p_inoc_scaffold_5627 9 7009 bp 57.35 4.52 69.04
scnpilot_p_inoc_scaffold_7191 9 9916 bp 60.63 4.33 79.14
scnpilot_p_inoc_scaffold_2205 9 13803 bp 62.02 4.40 82.20
scnpilot_p_inoc_scaffold_1853 9 16147 bp 65.94 5.05 91.13
scnpilot_p_inoc_scaffold_2206 9 13803 bp 69.00 4.84 89.85
scnpilot_p_inoc_scaffold_3679 9 9319 bp 58.19 3.81 54.37
scnpilot_p_inoc_scaffold_9986 9 4708 bp 52.04 3.92 63.08
scnpilot_p_inoc_scaffold_3944 9 8879 bp 56.18 4.80 63.32
scnpilot_p_inoc_scaffold_2218 9 13740 bp 61.70 4.65 85.00
scnpilot_p_inoc_scaffold_5663 9 6984 bp 52.13 4.38 53.82
scnpilot_p_inoc_scaffold_2993 9 11791 bp 64.06 4.44 71.01
scnpilot_p_inoc_scaffold_4109 9 11476 bp 60.05 16.13 71.29
scnpilot_p_inoc_scaffold_6287 9 11791 bp 60.57 4.38 60.02
scnpilot_p_inoc_scaffold_6037 9 7364 bp 55.30 3.83 62.17
scnpilot_p_inoc_scaffold_7997 9 5491 bp 58.24 5.46 95.61
Displaying items 151-200 of 2836 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.