ggKbase home page

scnpilot_p_inoc_scaffold_1452_8

Organism: SCNpilot_P_inoc_Chlorella_nuclear_28_4

partial RP 0 / 55 BSCG 4 / 51 ASCG 4 / 38
Location: comp(8797..11025)

Top 3 Functional Annotations

Value Algorithm Source
PREDICTED: DNA-directed RNA polymerase subunit 1-like n=1 Tax=unknown RepID=UPI0002B47E8A similarity UNIREF
DB: UNIREF100
  • Identity: 38.7
  • Coverage: 256.0
  • Bit_score: 199
  • Evalue 1.10e-47
Marine sediment metagenome DNA, contig: S01H1_L02007 {ECO:0000313|EMBL:GAF68912.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin similarity UNIPROT
DB: UniProtKB
  • Identity: 46.9
  • Coverage: 435.0
  • Bit_score: 398
  • Evalue 1.70e-107
RNA polymerase Rpb1 domain 5 similarity KEGG
DB: KEGG
  • Identity: 25.6
  • Coverage: 437.0
  • Bit_score: 128
  • Evalue 1.10e-26

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

marine sediment metagenome

Sequences

DNA sequence
Length: 2229
TTGATTGATTCTGCTGTTAAATCAGTGACGGGTGATACTGAAATTATAATAATAGAAAACAATGATTCAAAACTTGTTAAAATTGGAGAATGGATAGACAAACATCTAGAAAGTAATCCATTAAAAATAAAAAAATATACTGAAAGAAATTTGGAACTGCTTGAATTGAAAGATAAAGTATATATTCCAACAACAGACTATGATGGAAATGTATCATGGGCAGAATTGACAGCCGTTACGAGACATGATCCAGGTGAAGTGTTATATGAAATAGTAACACAAGGAGGTAGAAAAGTCATTGTGACGGAGTCAAAATCATTATTAGTGTGGAATAACAATAACAATAAACTTGAAGAGAGAGACACACCTCTGATTAATATCGGAGATAAGATACCAGTAACTATGAGATTATCTAGACCACCCATTATTAAAGATTGTATAAATATGGTAGATTATTTACCCAAAAAAGAATATTTATATGGTGGTGATTTTATAAAAGCTAAATTTGAGGTTGAAAATGAAATGAATAATAAACAAAAAATATCTTCAGGATGGTGGGGTAATAATAATGGTAAATTATTTACTTTGCCCTATAACACAAAAACAATGTTTACCAGAGTATTTAAAAGATCTAAAATTGACAATATAAAAGAAGGCTATATATATCCATTTTCAAGTAACAGAGATCATACATTAATACCTGATAAATTTAAACTAGATAGAGATAATGGATTATTCATAGGATTATTTTTAGCAGAAGGTTGTGTAAATATGACTAATGGAAATATTAGAATTTCAAATAACAATCCAAACGTAAGAAATTTTGTAAAAACATGGTTTAATAAATATTCAATTAAGTGCACAGAAACAACAAAAACTAAAGAAAAAATAATAGGAACAAAACTAACAATTGGTAAAACAACCGATATAGATGGCACTTCTATTGTGTTAGCTAAATTTTTAACAAAATTAGTTGGACATGGTTCAGAAAATAAACATGTACCTGCTGAAGCGTTTAATGCACCAGAAGAATTTATTATTGGATTATTAGATGGTTATTTCTCAGGAGATGGATGTGTTACAGATTCACAAATAGTAGCAAATTCAGTGTCTCTAAGATTGTTAAATGGAATTGCGATGTTATGCACAAGATTAGGTATATTTAGTACTATTTCTAAAGCAATTAATTCAGATGCAACAGGGTTTATAAAAAAATTACCATATTATAGATTTACAATCAGAACACATTCGGTTGATAAATTTAGGGAAAAGATTGTCTTGATTGATAATGTTAAAATGGATAAATTAAAAAATGTAATCCCAGCACATATAAACAGATATTATAATTATATAAATGACATTGCACTTGATCCAATTGTCGCTATTAATATAATAGACGTCAAAAAATATCCTAAAGTATATGATGTAACAGTTCCATCTACATTTAATTTCGGTTTAGCCAATGGATTGCAGGTTAGAGATACTGCAGAAAGTGGCTACCTGCAGCGCAAATTGGTCAAATCGATGGAGGACATAATGATAAAATATGATAGAACAGTGAGATTGGCAAATAATGCGGTAGTCCAATTTGTGTACGGAGATACAGGAGCAGACACAACAAAACAATATGAATACAACATTAAAATTTTGGAAATGGGTGATATTGAGTTAAAAGAAAAATACAAGATAAAGGACAGTGATTTGAATAAATATAAAATTTCAAAAGAAAGTAACGAAGAATTTTTCAACAACGTAAGAGAATTGAGAGACATATTAAGAGTATCACAAGTAAAATCTAGAATGGATTACAAAACATTAGGTACAGTATATATGATACCAATAAATTTAGTTGGTATAGTGGACAATATCAGGAACCATAAACCAGATCAAGTTGAACAATTGGAAGCTCAATATGTTTTAGACAAATTAGAAGAATTGTTGGATAATGATTTAACTAAATTGTGCTGTATATTGGATAAAGATAAGAATAATAAGGACTCAATTAAATATCAAGATGAACAAATATCCAAAACATCTTTCAAAATGGCATTATATGACTCTCTCGCACCAGCAAAATGCATATACGAATACAAATTATCAAAACAACAATTTGATTTAGTTATTACTGACATATCAAATAGTTATAATAAAAGTATAGCAGAAGCTGGCGAAATGGTTGGTGTAATAGCTGCACAATCATGTGGTGAACCAACTACTCAATGTGGGTAG
PROTEIN sequence
Length: 743
LIDSAVKSVTGDTEIIIIENNDSKLVKIGEWIDKHLESNPLKIKKYTERNLELLELKDKVYIPTTDYDGNVSWAELTAVTRHDPGEVLYEIVTQGGRKVIVTESKSLLVWNNNNNKLEERDTPLINIGDKIPVTMRLSRPPIIKDCINMVDYLPKKEYLYGGDFIKAKFEVENEMNNKQKISSGWWGNNNGKLFTLPYNTKTMFTRVFKRSKIDNIKEGYIYPFSSNRDHTLIPDKFKLDRDNGLFIGLFLAEGCVNMTNGNIRISNNNPNVRNFVKTWFNKYSIKCTETTKTKEKIIGTKLTIGKTTDIDGTSIVLAKFLTKLVGHGSENKHVPAEAFNAPEEFIIGLLDGYFSGDGCVTDSQIVANSVSLRLLNGIAMLCTRLGIFSTISKAINSDATGFIKKLPYYRFTIRTHSVDKFREKIVLIDNVKMDKLKNVIPAHINRYYNYINDIALDPIVAINIIDVKKYPKVYDVTVPSTFNFGLANGLQVRDTAESGYLQRKLVKSMEDIMIKYDRTVRLANNAVVQFVYGDTGADTTKQYEYNIKILEMGDIELKEKYKIKDSDLNKYKISKESNEEFFNNVRELRDILRVSQVKSRMDYKTLGTVYMIPINLVGIVDNIRNHKPDQVEQLEAQYVLDKLEELLDNDLTKLCCILDKDKNNKDSIKYQDEQISKTSFKMALYDSLAPAKCIYEYKLSKQQFDLVITDISNSYNKSIAEAGEMVGVIAAQSCGEPTTQCG*