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scnpilot_p_inoc_scaffold_609_curated

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Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_609_curated_1
RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated, Bacteroidetes, Bacteria

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comp(1..2922)
DNA (2922bp) protein (974aa)
PKD domain containing protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8ELG7_RUNSL
PKD domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated
scnpilot_p_inoc_scaffold_609_curated_2
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3358..4989
DNA (1632bp) protein (544aa)
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12]
Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256|RuleBase:RU361137}; EC=2.3.1.12 {ECO:0000256|RuleBase:RU361137};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PSN7_CHIPD
scnpilot_p_inoc_scaffold_609_curated_3
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(5105..5977)
DNA (873bp) protein (291aa)
cell wall hydrolase/autolysin; K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Pedobacter agri RepID=UPI00029A66E5
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:KIA91475.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
scnpilot_p_inoc_scaffold_609_curated_4
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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6190..8835
DNA (2646bp) protein (882aa)
Putative organic solvent tolerance protein OstA n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PH45_CHIPD
organic solvent tolerance protein OstA
Putative organic solvent tolerance protein OstA {ECO:0000313|EMBL:ACU63596.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_p_inoc_scaffold_609_curated_5
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9180..10304)
DNA (1125bp) protein (375aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PCE9_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU59532.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_p_inoc_scaffold_609_curated_6
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(10355..11176)
DNA (822bp) protein (274aa)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
enoyl-ACP reductase (NADH); K00208 enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9]
Enoyl-[acyl-carrier-protein] reductase [NADH] n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GLX5_9SPHI
scnpilot_p_inoc_scaffold_609_curated_7
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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11258..11749
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI000377EB78
Phenylacetate-CoA oxygenase {ECO:0000313|EMBL:AKD04091.1}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
phenylacetate-CoA oxygenase subunit PaaJ; K02612 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD
scnpilot_p_inoc_scaffold_609_curated_8
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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11838..12485
DNA (648bp) protein (216aa)
hypothetical protein; K08591 glycerol-3-phosphate acyltransferase PlsY [EC:2.3.1.15]
Glycerol-3-phosphate acyltransferase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PL07_CHIPD
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Lysophosphatidic acid synthase {ECO:0000256|HAMAP-Rule:MF_01043}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis
scnpilot_p_inoc_scaffold_609_curated_9
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12576..13259
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PK10_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU58351.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_p_inoc_scaffold_609_curated_10
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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13276..13968
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KWE3_HALH1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEE50293.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
scnpilot_p_inoc_scaffold_609_curated_11
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14008..15141)
DNA (1134bp) protein (378aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
DNA polymerase III subunit beta; K02338 DNA polymerase III subunit beta [EC:2.7.7.7]
DNA polymerase III subunit beta n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PHD5_CHIPD
scnpilot_p_inoc_scaffold_609_curated_12
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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15609..15881
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QCJ4_SPILD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB37999.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
scnpilot_p_inoc_scaffold_609_curated_13
unknown

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15881..16150
DNA (270bp) protein (90aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_609_curated_14

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comp(16158..17432)
DNA (1275bp) protein (425aa)
Integrase family protein n=1 Tax=Cycloclasticus sp. PY97M RepID=S2UHL4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KKM89228.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Integrase
scnpilot_p_inoc_scaffold_609_curated_15
unknown

Not on your lists

comp(17693..17827)
DNA (135bp) protein (45aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_609_curated_16
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

18166..18363
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QCK9_SPILD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB38014.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
scnpilot_p_inoc_scaffold_609_curated_17
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18435..19337
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJH6_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV99711.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_p_inoc_scaffold_609_curated_18
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

19346..19825
DNA (480bp) protein (160aa)
DNA repair protein RadC n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GRL7_9BACT
DNA repair protein RadC {ECO:0000313|EMBL:CCH56545.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
DNA repair protein RadC
scnpilot_p_inoc_scaffold_609_curated_19
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19866..20681
DNA (816bp) protein (272aa)
Site-specific DNA methylase {ECO:0000313|EMBL:EDQ34307.1}; EC=2.1.1.72 {ECO:0000313|EMBL:EDQ34307.1};; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
D12 class N6 adenine-specific DNA methyltransferase; K06223 DNA adenine methylase [EC:2.1.1.72]
Adenine specific DNA methyltransferase, D12 class n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D301_9RHIZ
scnpilot_p_inoc_scaffold_609_curated_20
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

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20870..21268
DNA (399bp) protein (133aa)
Uncharacterized protein n=2 Tax=Methylobacterium extorquens RepID=B7KNK0_METC4
Putative transposon {ECO:0000313|EMBL:CDH43651.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
hypothetical protein
scnpilot_p_inoc_scaffold_609_curated_21
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21307..23955)
DNA (2649bp) protein (883aa)
Conjugative relaxase domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJH2_NIAKG
conjugative relaxase domain-containing protein
Conjugative relaxase domain protein {ECO:0000313|EMBL:AEV99707.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_p_inoc_scaffold_609_curated_22
Flavobacterium johnsoniae, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24114..24557)
DNA (444bp) protein (148aa)
DNA repair protein RadC n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FDP1_FLAJ1
DNA repair protein RadC
DNA repair protein RadC {ECO:0000313|EMBL:ABQ06676.1}; TaxID=376686 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101); (Cytophaga johnsonae).;"
scnpilot_p_inoc_scaffold_609_curated_23
Mesorhizobium sp. L2C085B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24641..26728)
DNA (2088bp) protein (696aa)
UPI0003CEE756 related cluster n=1 Tax=unknown RepID=UPI0003CEE756
Uncharacterized protein {ECO:0000313|EMBL:ESZ12897.1}; TaxID=1287117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C085B000.;"
hypothetical protein
scnpilot_p_inoc_scaffold_609_curated_24
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(26920..28710)
DNA (1791bp) protein (597aa)
Type IV secretion system protein VirD4 n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GRK7_9BACT
Type IV secretion system protein VirD4 {ECO:0000313|EMBL:CCH56535.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
TRAG family protein; K03205 type IV secretion system protein VirD4
scnpilot_p_inoc_scaffold_609_curated_25
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

28980..29354
DNA (375bp) protein (125aa)
Mobilization protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJG2_NIAKG
mobilization protein
Mobilization protein {ECO:0000313|EMBL:AEV99697.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_p_inoc_scaffold_609_curated_26
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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29665..30918
DNA (1254bp) protein (418aa)
Integrase family protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S5Z4_PEDSD
integrase family protein
Integrase family protein {ECO:0000313|EMBL:ADY52097.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
scnpilot_p_inoc_scaffold_609_curated_27
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

31569..31961
DNA (393bp) protein (131aa)
Single-stranded DNA-binding protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W304_9FLAO
Single-stranded DNA-binding protein {ECO:0000256|PIRNR:PIRNR002070, ECO:0000256|RuleBase:RU000524}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
single stranded DNA-binding protein
scnpilot_p_inoc_scaffold_609_curated_28
Elizabethkingia miricola, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

32004..33077
DNA (1074bp) protein (358aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI00036E24D1
Alpha/beta hydrolase {ECO:0000313|EMBL:KGO08739.1}; TaxID=172045 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia miricola (Chryseobacterium miricola).;"
phage/plasmid-like protein
scnpilot_p_inoc_scaffold_609_curated_29
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

33128..33319
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W300_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EFK34711.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
hypothetical protein
scnpilot_p_inoc_scaffold_609_curated_30
Elizabethkingia miricola, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

33340..33534
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VNJ6_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:KGO08735.1}; TaxID=172045 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia miricola (Chryseobacterium miricola).;"
hypothetical protein
Displaying items 1-30 of 58 in total

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