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scnpilot_p_inoc_scaffold_1391_curated

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Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1391_curated_1
Thauera sp. 27, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..3093
DNA (3093bp) protein (1031aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=305700 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 27.;"
barA; putative sensor-regulator protein (EC:2.7.13.1); K07678 two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
Putative sensor-regulator protein n=1 Tax=Thauera sp. 27 RepID=N6X0Z9_9RHOO
scnpilot_p_inoc_scaffold_1391_curated_2
RIFOXYC2_FULL_Burkholderiales_59_8_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3090..4004
DNA (915bp) protein (305aa)
Response regulator receiver modulated diguanylate cyclase n=1 Tax=Thauera sp. 27 RepID=N6X7V0_9RHOO
response regulator receiver modulated diguanylate cyclase; K02488 two-component system, cell cycle response regulator
Tax=RIFOXYC2_FULL_Burkholderiales_59_8_curated
scnpilot_p_inoc_scaffold_1391_curated_3
Comamonas aquatica, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4056..6125
DNA (2070bp) protein (690aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001329}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00098}; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas aquatica DA1877.;"
metG; methionyl-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10]
Methionine--tRNA ligase n=1 Tax=Acidovorax sp. (strain JS42) RepID=SYM_ACISJ rbh
scnpilot_p_inoc_scaffold_1391_curated_4
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6241..7041)
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003714F96
Uncharacterized protein {ECO:0000313|EMBL:GAD23588.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
AraC family transcriptional regulator
scnpilot_p_inoc_scaffold_1391_curated_5
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7278..7895)
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037F9684
Putative threonine efflux protein {ECO:0000313|EMBL:GAD23589.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
lysine exporter protein LysE/YggA
scnpilot_p_inoc_scaffold_1391_curated_6
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8364..8870
DNA (507bp) protein (169aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003605194
Uncharacterized protein {ECO:0000313|EMBL:GAD23590.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1391_curated_7
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8867..9346
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Comamonas sp. B-9 RepID=UPI000395A662
Uncharacterized protein {ECO:0000313|EMBL:ENO90379.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1391_curated_8
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9379..10005
DNA (627bp) protein (209aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
superoxide dismutase n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI000367C1BB
superoxide dismutase
scnpilot_p_inoc_scaffold_1391_curated_9
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10017..10892
DNA (876bp) protein (292aa)
UPI0003D3EC9B related cluster n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI0003D3EC9B
Predicted divalent heavy-metal cations transporter {ECO:0000313|EMBL:GAD23592.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
zinc/iron permease; K07238 zinc transporter, ZIP family
scnpilot_p_inoc_scaffold_1391_curated_10
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10962..11612
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003647493
Lysophospholipase L1 and related esterases {ECO:0000313|EMBL:GAD23594.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
amino acid transport-like protein
scnpilot_p_inoc_scaffold_1391_curated_11
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11647..11787)
DNA (141bp) protein (47aa)
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000361101E
Uncharacterized protein {ECO:0000313|EMBL:GAD23597.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1391_curated_12
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11804..12127)
DNA (324bp) protein (108aa)
3-demethylubiquinone-9 3-methyltransferase; K00568 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000361101E
Uncharacterized protein {ECO:0000313|EMBL:GAD23597.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_p_inoc_scaffold_1391_curated_13
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12199..13152)
DNA (954bp) protein (318aa)
Cation diffusion facilitator family transporter n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T7H2_ACIDE
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:GAO21774.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
cation diffusion facilitator family transporter
scnpilot_p_inoc_scaffold_1391_curated_14
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13161..13433)
DNA (273bp) protein (91aa)
Uncharacterized protein n=2 Tax=Delftia acidovorans RepID=A9BR53_DELAS
Uncharacterized protein {ECO:0000313|EMBL:GAO21773.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1391_curated_15
Aeromonas molluscorum, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13519..14397)
DNA (879bp) protein (293aa)
LysR family transcriptional regulator n=1 Tax=Aeromonas molluscorum 848 RepID=R1GNL6_9GAMM
LysR family transcriptional regulator {ECO:0000313|EMBL:EOD53295.1}; TaxID=1268236 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas molluscorum 848.;"
putative transcriptional regulator, LysR family
scnpilot_p_inoc_scaffold_1391_curated_16
Alcaligenes faecalis, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14499..16031
DNA (1533bp) protein (511aa)
MFS permease n=2 Tax=Alcaligenes RepID=M5J2F7_9BURK
MFS transporter {ECO:0000313|EMBL:KGP03290.1}; TaxID=511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes faecalis.;"
MFS permease
scnpilot_p_inoc_scaffold_1391_curated_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16063..16464)
DNA (402bp) protein (134aa)
tRNA(fMet)-specific endonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1444126 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-460-02_S3_C1.;"
tRNA(fMet)-specific endonuclease VapC n=2 Tax=Enterobacteriaceae RepID=M8VSE0_ECOLX
plasmid maintenance protein; K07062
scnpilot_p_inoc_scaffold_1391_curated_18
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16461..16694)
DNA (234bp) protein (78aa)
Virulence-assiciated protein MvpT n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HC89_9RHIZ
Virulence-assiciated protein MvpT {ECO:0000313|EMBL:EPE96337.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
plasmid maintenance protein
scnpilot_p_inoc_scaffold_1391_curated_19
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16721..17452
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003612194
Uncharacterized protein {ECO:0000313|EMBL:GAD23603.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein; K05835 threonine efflux protein
scnpilot_p_inoc_scaffold_1391_curated_20
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17535..17858
DNA (324bp) protein (108aa)
antibiotic biosynthesis monooxygenase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003774F75
Uncharacterized protein {ECO:0000313|EMBL:GAD23606.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1391_curated_21
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17925..19448)
DNA (1524bp) protein (508aa)
GntR family transcriptional regulator n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037BA8E7
GntR family transcriptional regulator {ECO:0000313|EMBL:GAD23607.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
GntR family transcriptional regulator; K00375 GntR family transcriptional regulator / MocR family aminotransferase
scnpilot_p_inoc_scaffold_1391_curated_22
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19495..20712
DNA (1218bp) protein (406aa)
UPI0003D3B980 related cluster n=1 Tax=unknown RepID=UPI0003D3B980
Benzoate transporter {ECO:0000313|EMBL:GAD23608.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
benzoate transporter; K05782 benzoate membrane transport protein
scnpilot_p_inoc_scaffold_1391_curated_23
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20709..21503
DNA (795bp) protein (265aa)
racemase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003601B3B
Alanine racemase {ECO:0000313|EMBL:GAD23609.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
alanine racemase; K06997
scnpilot_p_inoc_scaffold_1391_curated_24
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21500..22207
DNA (708bp) protein (236aa)
glutamine amidotransferase class-I; K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
Glutamine amidotransferase class-I n=2 Tax=Alicycliphilus denitrificans RepID=E8U0S9_ALIDB
Glutamine amidotransferase {ECO:0000313|EMBL:GAO24750.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_p_inoc_scaffold_1391_curated_25
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22204..23064
DNA (861bp) protein (287aa)
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
pyridoxal kinase (EC:2.7.1.35); K00868 pyridoxine kinase [EC:2.7.1.35]
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035C2EB7
scnpilot_p_inoc_scaffold_1391_curated_26
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23078..23587)
DNA (510bp) protein (170aa)
Acetyltransferase n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7ULT9_MYXSD
acetyltransferase
Acetyltransferase {ECO:0000313|EMBL:AGC48968.1}; TaxID=1278073 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8).;"
scnpilot_p_inoc_scaffold_1391_curated_27
Vibrio sp. EJY3, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23597..24235)
DNA (639bp) protein (213aa)
NAD-dependent dehydratase n=1 Tax=Aeromonas hydrophila RepID=UPI0003768358
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:AEX23986.1}; TaxID=1116375 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio sp. (strain EJY3).;"
scnpilot_p_inoc_scaffold_1391_curated_28
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24235..25170)
DNA (936bp) protein (312aa)
alpha/beta hydrolase n=1 Tax=Aeromonas hydrophila RepID=UPI00036F4E37
Alpha/beta hydrolase {ECO:0000313|EMBL:KER69063.1}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
alpha/beta fold family hydrolase
scnpilot_p_inoc_scaffold_1391_curated_29
Burkholderia lata, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25242..26156)
DNA (915bp) protein (305aa)
alpha/beta hydrolase n=1 Tax=Aeromonas aquariorum RepID=UPI00029AA9A0
alpha/beta hydrolase; K06889
Alpha/beta superfamily hydrolase {ECO:0000313|EMBL:ABB06331.1}; TaxID=482957 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia lata (strain ATCC 17760 / LMG 22485 / NCIMB 9086 / R18194; / 383).;"
scnpilot_p_inoc_scaffold_1391_curated_30
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26286..27269
DNA (984bp) protein (328aa)
Transcriptional regulator, LysR family n=1 Tax=Comamonas testosteroni (strain CNB-2) RepID=D0IY76_COMT2
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACY33320.1}; TaxID=688245 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (strain CNB-2).;"
Displaying items 1-30 of 39 in total

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