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scnpilot_p_inoc_scaffold_7309_curated_4

Organism: scnpilot_dereplicated_Burkholderiales_8

near complete RP 51 / 55 MC: 1 BSCG 50 / 51 MC: 2 ASCG 13 / 38 MC: 1
Location: 4755..5465

Top 3 Functional Annotations

Value Algorithm Source
transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00035C444B similarity UNIREF
DB: UNIREF100
  • Identity: 86.6
  • Coverage: 232.0
  • Bit_score: 393
  • Evalue 2.10e-106
winged helix family two component transcriptional regulator; K07667 two-component system, OmpR family, KDP operon response regulator KdpE similarity KEGG
DB: KEGG
  • Identity: 86.6
  • Coverage: 232.0
  • Bit_score: 392
  • Evalue 8.50e-107
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ACS21593.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.6
  • Coverage: 232.0
  • Bit_score: 392
  • Evalue 3.80e-106

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 711
ATGACTTCATCACCGCCTTGCGTCGCCATTGTGATCGAGGACGAGCCGCAGATCCGGCGTTTCGTGCGCAGCGCACTGGAAGAAGAGGGCTGGCTGGTGCACGAAGCCGCCACCCGGCGCGATGGCCTGGCGGCCGCAGGCACGCGCAAGCCGGATTTGCTGGTGCTCGACCTGGGCCTGCCCGACGGCGACGGCGTGGAACTGATCCGCGACGTGCGCGGCTGGTCCAGCGTGCCCATCATCGTGCTCTCGGCGCGCGCCGACGAGGCGGACAAGATTGCCGCGCTCGACGCGGGGGCCGACGACTATCTCACCAAGCCCTTCGGCACCGGCGAACTGCTGGCGCGCGTGCGCGCCAACCTGCGCAGGCCGCGGGCCGCCGCTGGCGAGGCCGCCGAGGCGGTGTTCCGCTTCGGCGACGGCGCGGGCGCGGTGGAGATCGACCGCGCGCGGCGCCTGGTGCGCCGCGCGGGTGTGGAAGTCCACCTCACGCCGATCGAATACCGCCTGCTGGCGGTACTGGTGGCCAACGCGGGCCGCGTGCTCACCCAGCGGCAGCTGCTGCGCGAGGTCTGGGGGCCGGCGCACGGCGGCCAGAGCCACTACCTGCGCGTTTACATGGGCCATCTGCGCGGCAAGCTGGAGGTGGACCCCGCGCAGCCCCGCCACCTGCTCACCGAAACGGCCGTGGGCTACCGCCTCGTTTTTTGA
PROTEIN sequence
Length: 237
MTSSPPCVAIVIEDEPQIRRFVRSALEEEGWLVHEAATRRDGLAAAGTRKPDLLVLDLGLPDGDGVELIRDVRGWSSVPIIVLSARADEADKIAALDAGADDYLTKPFGTGELLARVRANLRRPRAAAGEAAEAVFRFGDGAGAVEIDRARRLVRRAGVEVHLTPIEYRLLAVLVANAGRVLTQRQLLREVWGPAHGGQSHYLRVYMGHLRGKLEVDPAQPRHLLTETAVGYRLVF*