ggKbase home page

scnpilot_p_inoc_scaffold_1873_curated_3

Organism: scnpilot_dereplicated_Burkholderiales_8

near complete RP 51 / 55 MC: 1 BSCG 50 / 51 MC: 2 ASCG 13 / 38 MC: 1
Location: 2353..3822

Top 3 Functional Annotations

Value Algorithm Source
rumA; 23S rRNA 5-methyluridine methyltransferase; K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] similarity KEGG
DB: KEGG
  • Identity: 89.6
  • Coverage: 470.0
  • Bit_score: 866
  • Evalue 4.20e-249
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000256|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000256|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01010}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.6
  • Coverage: 470.0
  • Bit_score: 866
  • Evalue 1.90e-248
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MHJ2_ACIET similarity UNIREF
DB: UNIREF100
  • Identity: 89.6
  • Coverage: 470.0
  • Bit_score: 866
  • Evalue 1.30e-248

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Acidovorax ebreus → Acidovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1470
ATGAGCGAAACGAACAAAGACGACCGTGCGGCCCTGCTGGCCGACGCGGCAGGCCCCGCAACCGAACTGCCGCCGGGCTGGCTCGAGGTGGTGTCCATGGACATGGACGCCCAGGGCGTGGCGCGCAAGCCCGATGGCAAGGTGGTGTTCATCGACGGCGCCCTGCCCACCGAATGGGTCAGTGCCAACACCCACCGCAAGAAGAACAACTGGGAGGCCGCCAGCCTGACGGCGATCCACCGCGAATCCGCCCAGCGTGTGCGGCCGGGCTGTCCGCACTTCGGGCTGCACGCGGGCGCCTGCGGAGGCTGCAAGATGCAGCATCTGCACGTCGGCGCCCAGGTGGCCGTCAAGCAGCGCGTGCTGGAGGACAACCTCTGGCACCTGGGCAAGGTCAAGGCCGAGACCATCCTGCGCCCGATCGAGGGCCCCGCGTGGGGCTACCGCTACCGCGCGCGCCTGTCGGTGCGGTTCGTGCCCAAGAAGGGCGTGGTGCTGGTGGGCTTCCACGAGCGCAAGAGCCGCTACATCGCCGACATGCAGACCTGCAAGATCCTGCCGCCGCACGTCGATGCCATGCTGATGCCGCTGCGCGCGCTGATCGGCGCGCTGCAGGCGCGCGACACCTGCCCGCAGATCGAACTGGCCTGCGGCGACACGGTGACGGCCCTGGTGTTGCGCCACCTCGAGCCGCTGGGCGAGGGCGACCTGGCCAGGCTGCGCACCTTCGCCGCCGAACATGGCGTGCAATGGTGGCTGCAGCCCAAAGGGCCCGATACGGTGCACTTGCTGGATGCCGAGGGCGCGGCGCAACTGGCCTACGGCCTGCCGGACTTCGGCATCACCATGCCGTTCAAGCCGACCGACTTCACGCAGGTGAATCCGCACATCAACCGCGTCCTGGTGACGCGCGCGCTGCGCCTGCTGGATGCCCGGAAGACCGAGCGCGTGATCGACTGGTTCTGCGGCCTGGGCAACTTCACCTTGCCGATCGCCACGCAGGCGCGCGAGGTGCTGGGCATCGAGGGCAGCGAGGCCCTGGTGGCGCGCTCGCGCGAGAATTATGAGAAAAATCAGGCCCAAAGGTCCACGCAGCAAGCGCTGGCAGCTACCAGTTTCGTAGCGCGCAACCTGTTCGAGATGACACCGGAGATGCTGGTGGCCGATGGCACGGCCGACAAATGGCTGGTCGATCCGCCGCGCGAAGGGGCGTTTGCCTTGTCGAAGGCACTGGCCGACATCCACCAGGCGCGCCTGGGCGCCGAGGGGGCGCCGCCCTTGCCTGCGGGCGCCGCGCACTGGGCGCCGCCCCAGCGCATCGTGTACGTGAGCTGCAATCCCGCCACCCTGGCGCGCGATGCGGGGCTGCTGGTGCACCAGGCGGGATACCGCTGCGTGGCGGCGGGAGTGGTCAACATGTTCCCGCACACGGCACACGTCGAAAGCATGGCCGTCTTCGAGCGCGCCTGA
PROTEIN sequence
Length: 490
MSETNKDDRAALLADAAGPATELPPGWLEVVSMDMDAQGVARKPDGKVVFIDGALPTEWVSANTHRKKNNWEAASLTAIHRESAQRVRPGCPHFGLHAGACGGCKMQHLHVGAQVAVKQRVLEDNLWHLGKVKAETILRPIEGPAWGYRYRARLSVRFVPKKGVVLVGFHERKSRYIADMQTCKILPPHVDAMLMPLRALIGALQARDTCPQIELACGDTVTALVLRHLEPLGEGDLARLRTFAAEHGVQWWLQPKGPDTVHLLDAEGAAQLAYGLPDFGITMPFKPTDFTQVNPHINRVLVTRALRLLDARKTERVIDWFCGLGNFTLPIATQAREVLGIEGSEALVARSRENYEKNQAQRSTQQALAATSFVARNLFEMTPEMLVADGTADKWLVDPPREGAFALSKALADIHQARLGAEGAPPLPAGAAHWAPPQRIVYVSCNPATLARDAGLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFERA*