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scnpilot_p_inoc_scaffold_2877_curated_8

Organism: scnpilot_dereplicated_Burkholderiales_8

near complete RP 51 / 55 MC: 1 BSCG 50 / 51 MC: 2 ASCG 13 / 38 MC: 1
Location: comp(4478..5047)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0QAP0_ACIAP similarity UNIREF
DB: UNIREF100
  • Identity: 86.8
  • Coverage: 189.0
  • Bit_score: 328
  • Evalue 5.00e-87
RNA polymerase sigma-E factor-like similarity KEGG
DB: KEGG
  • Identity: 98.9
  • Coverage: 189.0
  • Bit_score: 375
  • Evalue 1.10e-101
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADX46081.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.8
  • Coverage: 189.0
  • Bit_score: 328
  • Evalue 7.10e-87

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Taxonomy

Acidovorax avenae → Acidovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 570
TTGGCAACGGAACAAGAACTCTCCGACTTTCTCAAAAGCGTGGAAAAGCGCGCCTACAAGCGCTCGCTTTACCACGTGCGCAACGAGGAAGCAGCCCTGGACATCGTGCAGGACAGCATGCTCAAGCTGGCCGAGCATTACGGCGACAAGCCCCCCGCAGAGCTGCCGATGCTGTTCCAGCGCATCCTGTCGAACTGCACGCTGGACTGGTTTCGCCGTCAGAAAACGCGCAACGCGCTGTTCTCCAGCATGAGCGACTTCGAGGGAAACGACGAAGATGGCGCAGAATTCAACCTGCTCGAAACCTACAGCGGCCCCCATGGCGACGAAGCCGCCCAAAGCGCCGAAACACTCACCCAGCGCGCCCAGACGCTGCAAGGCATCGAGGCGGAGATCCAGGGGCTGCCAGCGCGTCAACGCGAGGCGTTTTTGATGCGTTATTGGGAGGAAATGGACGTGGCCGAAACGGCAGCCGCAATGGGCTGCACGGAAGGCAGCGTCAAAACACATTGCTTTCGGGCCATCCAGACCCTCAGCAAAGCACTGAAGGCCAGAGGAATCACACTATGA
PROTEIN sequence
Length: 190
LATEQELSDFLKSVEKRAYKRSLYHVRNEEAALDIVQDSMLKLAEHYGDKPPAELPMLFQRILSNCTLDWFRRQKTRNALFSSMSDFEGNDEDGAEFNLLETYSGPHGDEAAQSAETLTQRAQTLQGIEAEIQGLPARQREAFLMRYWEEMDVAETAAAMGCTEGSVKTHCFRAIQTLSKALKARGITL*