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scnpilot_p_inoc_scaffold_954_curated

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_954_curated_1
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(174..1136)
DNA (963bp) protein (321aa)
glutathione synthetase (EC:6.3.2.3)
Glutathione synthetase n=1 Tax=Acidovorax sp. KKS102 RepID=K0IFM8_9BURK
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_954_curated_2
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1182..2372)
DNA (1191bp) protein (397aa)
Benzoate transporter n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T8L0_ACIDE
benzoate transporter; K05782 benzoate membrane transport protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_954_curated_3
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2773..3387
DNA (615bp) protein (205aa)
Uncharacterized protein n=2 Tax=Delftia acidovorans RepID=S2WQC5_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD40295.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
hypothetical protein
scnpilot_p_inoc_scaffold_954_curated_4
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3384..4229
DNA (846bp) protein (282aa)
Uncharacterized protein n=2 Tax=Delftia acidovorans RepID=S2WTQ2_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD43168.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
hypothetical protein
scnpilot_p_inoc_scaffold_954_curated_5
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4245..5576)
DNA (1332bp) protein (444aa)
Uncharacterized protein n=3 Tax=Oligotropha carboxidovorans RepID=F8BHL2_OLICM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05087.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_p_inoc_scaffold_954_curated_6
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5645..7219
DNA (1575bp) protein (525aa)
Uncharacterized protein n=1 Tax=Pseudomonas putida (strain GB-1) RepID=B0KKB3_PSEPG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABY96441.1}; TaxID=76869 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida (strain GB-1).;"
scnpilot_p_inoc_scaffold_954_curated_7
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7499..8785)
DNA (1287bp) protein (429aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036AC349
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
scnpilot_p_inoc_scaffold_954_curated_8
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8788..9801)
DNA (1014bp) protein (338aa)
conjugal transfer protein TrbG/VirB9/CagX; K03204 type IV secretion system protein VirB9 id=12498577 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Conjugative transfer protein TrbG; K03204 type IV secretion system protein VirB9
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
scnpilot_p_inoc_scaffold_954_curated_9
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9798..10505)
DNA (708bp) protein (236aa)
conjugal transfer protein TrbF n=1 Tax=Variovorax paradoxus RepID=UPI00036C819E
Conjugal transfer protein TrbF {ECO:0000313|EMBL:GAO21468.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
trbF; conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
scnpilot_p_inoc_scaffold_954_curated_10
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10519..11886)
DNA (1368bp) protein (456aa)
conjugal transfer protein TrbL n=1 Tax=Variovorax paradoxus RepID=UPI0003738F12
Conjugal transfer protein TrbL {ECO:0000313|EMBL:GAO21469.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
scnpilot_p_inoc_scaffold_954_curated_11
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11883..12173)
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003647B0C
hypothetical protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
scnpilot_p_inoc_scaffold_954_curated_12
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12184..12951)
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036E3106
conjugal transfer protein TrbJ
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
scnpilot_p_inoc_scaffold_954_curated_13
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12964..15399)
DNA (2436bp) protein (812aa)
conjugal transfer protein TrbE n=1 Tax=Thiobacillus denitrificans RepID=UPI000365D4CA
Conjugal transfer protein TrbE {ECO:0000313|EMBL:AJP47674.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
trbE1; conjugal transfer ATPase TrbE; K03199 type IV secretion system protein VirB4
scnpilot_p_inoc_scaffold_954_curated_14
Azotobacter vinelandii, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15410..15667)
DNA (258bp) protein (86aa)
P-type conjugative transfer protein TrbD n=3 Tax=Azotobacter vinelandii RepID=C1DR59_AZOVD
trbD; P-type conjugative transfer protein TrbD
P-type conjugative transfer protein TrbD {ECO:0000313|EMBL:AGK18886.1}; TaxID=1283331 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter vinelandii CA6.;"
scnpilot_p_inoc_scaffold_954_curated_15
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15664..15996)
DNA (333bp) protein (111aa)
conjugal transfer protein TrbC n=1 Tax=Thiobacillus denitrificans RepID=UPI0003665B36
Conjugal transfer protein TrbC {ECO:0000313|EMBL:GAO21474.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
scnpilot_p_inoc_scaffold_954_curated_16
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15993..17021)
DNA (1029bp) protein (343aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000369BC04
P-type conjugative transfer ATPase TrbB {ECO:0000313|EMBL:GAO21475.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
type II secretion system protein E; K03196 type IV secretion system protein VirB11
scnpilot_p_inoc_scaffold_954_curated_17
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17005..17478)
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036FE761
CopG/DNA-binding domain-containing protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
scnpilot_p_inoc_scaffold_954_curated_18
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17475..19487)
DNA (2013bp) protein (671aa)
conjugal transfer protein TraG n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C7ECF
Conjugal transfer coupling protein TraG {ECO:0000313|EMBL:GAO21477.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Type IV secretion system protein VirD4; K03205 type IV secretion system protein VirD4
scnpilot_p_inoc_scaffold_954_curated_19
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19757..20644)
DNA (888bp) protein (296aa)
Transcriptional regulator, LysR family n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T7Q3_ACIDE
Transcriptional regulator, LysR family {ECO:0000313|EMBL:GAO21484.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
transcriptional regulator, LysR family
scnpilot_p_inoc_scaffold_954_curated_20
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20741..22402)
DNA (1662bp) protein (554aa)
long-chain fatty acid--CoA ligase n=1 Tax=Acidovorax radicis RepID=UPI0002375FE2
long-chain-fatty-acid--CoA ligase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
scnpilot_p_inoc_scaffold_954_curated_21
unknown

Not on your lists

23289..23546
DNA (258bp) protein (86aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_954_curated_22
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23547..24548)
DNA (1002bp) protein (334aa)
Glutaminase-asparaginase {ECO:0000313|EMBL:AJK45190.1}; EC=3.5.1.38 {ECO:0000313|EMBL:AJK45190.1};; TaxID=595500 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glumae PG1.;"
type II L-asparaginase; K05597 glutamin-(asparagin-)ase [EC:3.5.1.38]
Glutamine-asparaginase n=2 Tax=Burkholderia multivorans RepID=B9BAR3_9BURK
scnpilot_p_inoc_scaffold_954_curated_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24682..26265
DNA (1584bp) protein (528aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00037A6D9E
putative peptide ABC transporter, peptide-binding protein
Putative peptide ABC transporter, peptide-binding protein {ECO:0000313|EMBL:AGU50798.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
scnpilot_p_inoc_scaffold_954_curated_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26674..27219
DNA (546bp) protein (182aa)
peptide ABC transporter n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI0002F6ADB3
putative peptide ABC transporter, permease protein
Putative peptide ABC transporter, permease protein {ECO:0000313|EMBL:AGU50797.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
scnpilot_p_inoc_scaffold_954_curated_25
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27542..28675
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Cupriavidus basilensis OR16 RepID=H1SAU4_9BURK
Microcystinase C {ECO:0000256|PIRNR:PIRNR012702}; Short=MlrC {ECO:0000256|PIRNR:PIRNR012702};; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
hypothetical protein
scnpilot_p_inoc_scaffold_954_curated_26
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28672..29604
DNA (933bp) protein (311aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WRU3_9BURK
ABC-type dipeptide/oligopeptide/nickel transport system, permease component {ECO:0000313|EMBL:EHR73390.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
putative peptide ABC transporter, permease protein
scnpilot_p_inoc_scaffold_954_curated_27
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29601..31244
DNA (1644bp) protein (548aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI0002F2CFBA
ATPase component of various ABC-type transport systems with duplicated ATPase domain {ECO:0000313|EMBL:EHR73389.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
gsiA1; putative glutathione ABC transporter, ATP-binding protein GsiA
scnpilot_p_inoc_scaffold_954_curated_28
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31249..32535
DNA (1287bp) protein (429aa)
D-amino acid dehydrogenase small subunit (EC:1.4.99.1); K00285 D-amino-acid dehydrogenase [EC:1.4.99.1]
D-amino acid dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01202}; EC=1.4.99.1 {ECO:0000256|HAMAP-Rule:MF_01202};; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia; eutropha (strain JMP 134)).;"
hypothetical protein n=1 Tax=Burkholderia kururiensis RepID=UPI000380E059
scnpilot_p_inoc_scaffold_954_curated_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32548..33381
DNA (834bp) protein (278aa)
ornithine cyclodeaminase/mu-crystallin; K01750 ornithine cyclodeaminase [EC:4.3.1.12]
Ornithine cyclodeaminase/mu-crystallin n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V248_VARPE
Ornithine cyclodeaminase/mu-crystallin {ECO:0000313|EMBL:ADU39127.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
Displaying 29 items

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