ggKbase home page

scnpilot_p_inoc_scaffold_281_curated_14

Organism: scnpilot_dereplicated_Burkholderiales_7

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 13 / 38
Location: 10896..11615

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T9E1_ACIDE similarity UNIREF
DB: UNIREF100
  • Identity: 72.6
  • Coverage: 237.0
  • Bit_score: 327
  • Evalue 1.10e-86
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 72.6
  • Coverage: 237.0
  • Bit_score: 327
  • Evalue 1.50e-86
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 65.6
  • Coverage: 227.0
  • Bit_score: 282
  • Evalue 9.70e-74

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Acidovorax delafieldii → Acidovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 720
ATGCAGTCCTTGTCCACAGACCGTGCGGAGCGCTCTGCCGGCGCCGCGCACCCCGATGCAGAACTGGTGGCGCGCGCCCTGCGCGGAGAGCAGAGCGCCTTCGAGGCCATCATGCGGCGCCACAACCGGATGCTGTTCCGCGCCGCGCGCGGCGTGGTCGCGGACGACGCCGATGCCCAGGACGTGGTGCAGGAAACCTATTTGCGTGCCTTCACCCGGCTGCAGGACTTCCAGGGTGGCGCTGCGCTGGGCACGTGGATGGTGCGCATCGCCATCAACACGGCGCTGGACATGTTGCGCAAGCGCGGCCGGTCGGTGCCGCTGGAGGTCCAGGATCTGGACCGTGAACCTTCGCCGGAGCACATGATGTCCCTGAGCACGCCCCAAGAGGTATCTCCCGAATCGCTGCAGGCCCGCGCGGAGCTGCGCGCGCTGCTGCAGTCCGCCATCGCCGGGCTTGCGCCCATCTACCGCAGCGTCTTCATCCTGCGGGCGGTGGAGGAGATGAGTGTGGAGGAGGCCGCGTACTGCCTGCAGGTGAGTGACGCCGTCGTCAAGACACGCTATCTGCGCGCGCGCGCCCTGCTGCGCGATGCGCTCGGTGCGCAGATCGAGGCGCATGCCGGCGAGGTGTTTGCCTTTGCCGGCGAGCGTTGCAACCAGGTCGTGGGCTATGTCCTGGCCGAACTCCACAGGCGCGGGTGCATCGTGCGGCACTGA
PROTEIN sequence
Length: 240
MQSLSTDRAERSAGAAHPDAELVARALRGEQSAFEAIMRRHNRMLFRAARGVVADDADAQDVVQETYLRAFTRLQDFQGGAALGTWMVRIAINTALDMLRKRGRSVPLEVQDLDREPSPEHMMSLSTPQEVSPESLQARAELRALLQSAIAGLAPIYRSVFILRAVEEMSVEEAAYCLQVSDAVVKTRYLRARALLRDALGAQIEAHAGEVFAFAGERCNQVVGYVLAELHRRGCIVRH*