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scnpilot_p_inoc_scaffold_2571_curated_1

Organism: scnpilot_dereplicated_Burkholderiales_7

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 13 / 38
Location: 1..402

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MCY9_ACIET similarity UNIREF
DB: UNIREF100
  • Identity: 97.7
  • Coverage: 133.0
  • Bit_score: 256
  • Evalue 1.70e-65
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas aquatica DA1877.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.7
  • Coverage: 133.0
  • Bit_score: 257
  • Evalue 8.30e-66
RNA polymerase sigma-70 subunit RpoD; K03086 RNA polymerase primary sigma factor similarity KEGG
DB: KEGG
  • Identity: 97.7
  • Coverage: 133.0
  • Bit_score: 256
  • Evalue 5.40e-66

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Taxonomy

Comamonas aquatica → Comamonas → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 402
GTGCTGGCCGAGAAGATGGAGATCCCCGAGGACAAGATCCGCAAGATCATGAAGATCGCCAAGGAGCCGATCTCCATGGAAACGCCCATCGGCGACGACGACGACAGCCACCTGGGCGACTTCATCGAGGACAGCGCCAACACCGCGCCCGTGGACGCCGCCATGCAGGCCGGCCTGCGCGACGTGGTCAAGGACATCCTCGACGGCCTCACGCCGCGCGAAGCCAAGGTGCTGCGCATGCGCTTCGGCATCGAGATGTCCACCGACCACACGCTGGAGGAAGTGGGCAAGCAGTTCGACGTGACGCGCGAACGCATCCGCCAGATCGAGGCCAAGGCGCTGCGCAAGTTGAAGCACCCCAGCCGCAGCGACAAGCTGCGCAGCTTCATCGACTCGCTGTAA
PROTEIN sequence
Length: 134
VLAEKMEIPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDSANTAPVDAAMQAGLRDVVKDILDGLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLKHPSRSDKLRSFIDSL*