ggKbase home page

scnpilot_p_inoc_scaffold_794_curated_14

Organism: scnpilot_dereplicated_Flavobacterium_2

near complete RP 53 / 55 MC: 3 BSCG 51 / 51 ASCG 15 / 38 MC: 1
Location: comp(13989..14555)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-24 factor n=1 Tax=Flavobacterium saliperosum S13 RepID=V6SAZ4_9FLAO similarity UNIREF
DB: UNIREF100
  • Identity: 90.1
  • Coverage: 171.0
  • Bit_score: 315
  • Evalue 3.40e-83
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:KGO90257.1}; TaxID=1121899 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium suncheonense GH29-5 = DSM 17707.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.8
  • Coverage: 187.0
  • Bit_score: 335
  • Evalue 4.40e-89
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 77.3
  • Coverage: 181.0
  • Bit_score: 291
  • Evalue 2.10e-76

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Flavobacterium suncheonense → Flavobacterium → Flavobacteriales → Flavobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 567
TTGGAAATAAATTCAGAGATAATTCAAAAAAACATTGAAAAGGCAAAATCCGGAGATCAGGTAGCCTTTACATTTTTGCTGGATTTTTTCTGGAATGAGATTTACGGCTTTATGCTGAAACGTACCGAAAACGAAACGGACACCGAAGATATTGCCATTGAAACGTTTGCAAAAGCTTTTGACAAAATAACTTCCTACAATCCGGAATTCGGATTCAATACCTGGCTGATTACCATTGCCAAGAACGTCCATATTGATATGCTGCGTAAAAAGAAATCGGCATTGTTTCTGGACATCAATGACGAAGAAAACCAACAGGCATACAATGTTATCGACTCCTCACCCACCATTGAAGACGAGATCATTAAAGAGCAAAACCTTGCCCGTTTATTACTGTACATCAAGGAATTAAAACCGGCCTACCAGGAAGTTATCCAGCTGCGTTATTTCCAGGAAATGAGTTATCAGGAAATTGCCGATCAGCTTGAAGAGCCGCTAAACAATGTAAAAATCAAACTGTTGCGTGCCAAAAAGCTTTTATTTGAAATTATTCAACAAAAAAGATAA
PROTEIN sequence
Length: 189
LEINSEIIQKNIEKAKSGDQVAFTFLLDFFWNEIYGFMLKRTENETDTEDIAIETFAKAFDKITSYNPEFGFNTWLITIAKNVHIDMLRKKKSALFLDINDEENQQAYNVIDSSPTIEDEIIKEQNLARLLLYIKELKPAYQEVIQLRYFQEMSYQEIADQLEEPLNNVKIKLLRAKKLLFEIIQQKR*