ggKbase home page

scnpilot_p_inoc_scaffold_817_curated_14

Organism: scnpilot_dereplicated_Flavobacterium_2

near complete RP 53 / 55 MC: 3 BSCG 51 / 51 ASCG 15 / 38 MC: 1
Location: comp(15596..16144)

Top 3 Functional Annotations

Value Algorithm Source
Putative RNA polymerase ECF-type sigma factor n=1 Tax=Flavobacterium cauense R2A-7 RepID=V6S5I5_9FLAO similarity UNIREF
DB: UNIREF100
  • Identity: 72.0
  • Coverage: 182.0
  • Bit_score: 274
  • Evalue 8.30e-71
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:ESU21958.1}; TaxID=1341154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium cauense R2A-7.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 72.0
  • Coverage: 182.0
  • Bit_score: 274
  • Evalue 1.20e-70
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 66.3
  • Coverage: 169.0
  • Bit_score: 240
  • Evalue 3.20e-61

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Flavobacterium cauense → Flavobacterium → Flavobacteriales → Flavobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 549
TTGAGTGTCGAGCAAATCATATACGATTGTAAAAACAACGACCGCAAAGCACAGGAGCAGCTCTACAAGCTATTATCTCCAAAGCTTTTTGCCGTCTGTTTGAAGTATTCTCGTAATTATGCCGAAGCAGAAGACAACTTACAGGATGGTTTTATTTTACTGTTTAAAAAAATTGAACAATATCAATTTAGAGGTTCTTTTGAAGGTTGGGCGAAACGATTGATGATTAATAATATTCTTCAGAAATACCGCAATCAGGGTGTTTATGAATTAGTGAATGACAATATTATTGACAACAATCCAACGGTGGATTTTGACGATGAAGATGTATCCCTCGATTATCTCATCAGCATTATCCAGGAATTACCGGATCGGTACCGACTGGTGTTCAACCTGTATGTAATGGATGATTATTCGCATAAGGAAATCGCCGAAATGCTGAACATTACAATAGGAACATCAAAATCAAATCTGGCAAGAGCCCGGATGATTTTAAAAGAAAAAATTGAAATACAACAACACAACAGAAAAGTATCCTCAACACAATGA
PROTEIN sequence
Length: 183
LSVEQIIYDCKNNDRKAQEQLYKLLSPKLFAVCLKYSRNYAEAEDNLQDGFILLFKKIEQYQFRGSFEGWAKRLMINNILQKYRNQGVYELVNDNIIDNNPTVDFDDEDVSLDYLISIIQELPDRYRLVFNLYVMDDYSHKEIAEMLNITIGTSKSNLARARMILKEKIEIQQHNRKVSSTQ*