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scnpilot_p_inoc_scaffold_1701_curated_11

Organism: scnpilot_dereplicated_Hydrogenophaga_1

near complete RP 50 / 55 MC: 1 BSCG 49 / 51 MC: 3 ASCG 12 / 38
Location: 13504..14202

Top 3 Functional Annotations

Value Algorithm Source
Putative ECF-family RNA polymerase sigma factor n=4 Tax=Bordetella RepID=K4QEG6_BORBO similarity UNIREF
DB: UNIREF100
  • Identity: 77.0
  • Coverage: 230.0
  • Bit_score: 336
  • Evalue 3.00e-89
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 77.0
  • Coverage: 230.0
  • Bit_score: 336
  • Evalue 9.30e-90
  • rbh
Putative ECF-family RNA polymerase sigma factor {ECO:0000313|EMBL:CAE37684.1}; TaxID=257311 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 77.0
  • Coverage: 230.0
  • Bit_score: 336
  • Evalue 4.20e-89

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Taxonomy

Bordetella parapertussis → Bordetella → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 699
ATGCACAGCACCCAAGGCGGCACGCCCGTGCCGGCCGATGAGCAGCCGGCGGACGCCGCAGACAACACGCTGGCGGCGCGCGCCGCCCACGGTGACGAGGCCGCCTTCGAGACCATCATGCGACGCCACAACCGACTGCTCTTTCGCACGGCCCGCAGCATCCTGAAGAACGACGAGGAGGCACAGGACGTGCTGCAGGACGCCTACCTGCGCGCCTGGCGCGCGCTGGGCGGCTTTCGCGCCGACGCCAGGCTGTCGACCTGGCTGGCGCGCATCGTGATCAACGAAGCCCTGGGGCGGCTGCGCCGGCGCGAGGTGCCGGTGATTCCGCTCGACGCTGCGATGGCGTCCCTCGAGCCCGACATGCAGCGCTGGCTGAGCGACGACGTGGACCGCCAGCCGGACCGCCTTGCCATGCGCGAGCAGATCCGCCGGCTGATGGAGGCGCGCATCGACGGGCTGCCCGAGGCTTTTCGCAGCGTCTTCGTGCTGCGCGGCGTGGAAGAGCTGAGCGTGGAGGAGGTGGCGCAGGCGCTGGACATTCCCGAGGCCACGGTGCGCACGCGCTTCTTCCGCGCGCGCAGCCTCTTGCGCGAAGGGCTCTCGCGCGATGTGGACATGGCCATCGCCGACGCCTTCTCGTTCGACGGCGAGCGCTGCGACCGCATCGTGGCCCGCGTGCTCCAGCGCCTGAGCTGA
PROTEIN sequence
Length: 233
MHSTQGGTPVPADEQPADAADNTLAARAAHGDEAAFETIMRRHNRLLFRTARSILKNDEEAQDVLQDAYLRAWRALGGFRADARLSTWLARIVINEALGRLRRREVPVIPLDAAMASLEPDMQRWLSDDVDRQPDRLAMREQIRRLMEARIDGLPEAFRSVFVLRGVEELSVEEVAQALDIPEATVRTRFFRARSLLREGLSRDVDMAIADAFSFDGERCDRIVARVLQRLS*