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scnpilot_p_inoc_scaffold_3661_curated_6

Organism: scnpilot_dereplicated_Hydrogenophaga_1

near complete RP 50 / 55 MC: 1 BSCG 49 / 51 MC: 3 ASCG 12 / 38
Location: 5027..5332

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein Hfq n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MP64_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 97.0
  • Coverage: 101.0
  • Bit_score: 200
  • Evalue 6.50e-49
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.0
  • Coverage: 101.0
  • Bit_score: 200
  • Evalue 9.20e-49
hfq; RNA-binding protein Hfq; K03666 host factor-I protein similarity KEGG
DB: KEGG
  • Identity: 85.2
  • Coverage: 88.0
  • Bit_score: 151
  • Evalue 1.90e-34

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Taxonomy

Hydrogenophaga sp. PBC → Hydrogenophaga → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 306
ATGCCCGTGTGGTATGTTTCCACCCTCCAAAACCAGCCGAACACGGAGCATATCGTGAGCAACAACAAAGGCCAGCTCTTGCAAGACCCGTTCCTGAACCAATTGCGCCGGGAACATGTCCCCGTCTCGATCTACCTGGTCAACGGCATCAAGCTGCAGGGCCAGATCGAGTCCTTCGACCAGTACGTCGTGCTGTTGCGCAACACCGTGACGCAAATGGTCTACAAGCACGCCATCTCGACCATCGTTCCCGGTCGTCCCGTGCAGTTCTCGGCCAACAACCCCGACGATTCCAACGCCGCCTGA
PROTEIN sequence
Length: 102
MPVWYVSTLQNQPNTEHIVSNNKGQLLQDPFLNQLRREHVPVSIYLVNGIKLQGQIESFDQYVVLLRNTVTQMVYKHAISTIVPGRPVQFSANNPDDSNAA*