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scnpilot_p_inoc_scaffold_5208_curated_2

Organism: scnpilot_dereplicated_Hydrogenophaga_1

near complete RP 50 / 55 MC: 1 BSCG 49 / 51 MC: 3 ASCG 12 / 38
Location: comp(827..1408)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MPK9_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 90.6
  • Coverage: 181.0
  • Bit_score: 332
  • Evalue 3.60e-88
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 90.6
  • Coverage: 181.0
  • Bit_score: 332
  • Evalue 5.00e-88
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 74.3
  • Coverage: 191.0
  • Bit_score: 282
  • Evalue 7.80e-74

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Taxonomy

Hydrogenophaga sp. PBC → Hydrogenophaga → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 582
ATGCGCCGCATGAGCGCCGACCCCGACGAACTCCTCATGGACCTGATCGATCGCATCGCCCAGCGCGACGAGGCCGCGCTGAAGGCGCTCTACGACCTCACCGCGCGCAAGCTCTACGGGCTGTCGCTGCGCGTGCTGGGCTCCGCGGAGGCGGCGGAGGACGCGCTGCAGGAGGCCTACCTGCAGGTCTGGCGCAGCGCGGGCGACTACCGCGCCACACTGAGCCCGCCCATGGCCTGGCTGGGCCTGATCGTGCGCAGCCGCTCACTGGACCTGCTGCGCCGCCGCGCGGCCGATCGCGCCCACCTCACGCAGGAGCTCGACGAGGTCCTGGCCGACACGCTGCCCGGCGACGCGCCCAACCCCATGGACACCAGCCTGGCGAGCCAGCAGGCCTGGGCCATGCACCAGTGCCTGGGGCAACTGGAGAACAAGCAGCGCGAAGTGATCAGCCTGGCCTACCTGCGCGACCTGAGCCACGGCGAGCTGGCCGAGCGCCTGGCGCTGCCGCTGGGCACCGTCAAGACCTGGATCCGCCGCGGCCTGGACAAGCTGCGCGACTGCATGGCCCGTTTCGCCTGA
PROTEIN sequence
Length: 194
MRRMSADPDELLMDLIDRIAQRDEAALKALYDLTARKLYGLSLRVLGSAEAAEDALQEAYLQVWRSAGDYRATLSPPMAWLGLIVRSRSLDLLRRRAADRAHLTQELDEVLADTLPGDAPNPMDTSLASQQAWAMHQCLGQLENKQREVISLAYLRDLSHGELAERLALPLGTVKTWIRRGLDKLRDCMARFA*