ggKbase home page

scnpilot_p_inoc_scaffold_583_curated_19

Organism: scnpilot_dereplicated_Hydrogenophaga_1

near complete RP 50 / 55 MC: 1 BSCG 49 / 51 MC: 3 ASCG 12 / 38
Location: 20556..21530

Top 3 Functional Annotations

Value Algorithm Source
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.0
  • Coverage: 324.0
  • Bit_score: 575
  • Evalue 5.70e-161
truB; tRNA pseudouridine synthase B; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] similarity KEGG
DB: KEGG
  • Identity: 68.6
  • Coverage: 325.0
  • Bit_score: 425
  • Evalue 2.10e-116
tRNA pseudouridine synthase B n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MH62_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 88.0
  • Coverage: 324.0
  • Bit_score: 575
  • Evalue 4.10e-161

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Hydrogenophaga sp. PBC → Hydrogenophaga → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 975
ATGCAGCGCCAACGCACGAGGGTGCAACGGCGCCCCGTGCATGGGGTGCTGCTGCTCGACAAACCGCTGGGCCTGTCCAGCAACCAGGCCTTGCAGAAGGCCAAGTGGCTGCTGCGCGCTGAAAAAGCCGGCCACACCGGCACGCTCGACCCCCTGGCCACGGGCGTTCTGCCGCTGTGTTTTGGCGCGGCCACCAAGTTCAGCCAGCTGCACCTGGACGCCGACAAGACCTACGAAACCACCGTGCGACTGGGCGTGCGCACGCGCACGGCCGACGCCGAGGGCGAGGTCATCGACACCCGCCCCGTGTCGTGCTCCGCCGGCCAGGTGGTGGAGGTGCTGGACCGCTTCATGGGCGAGATCGACCAGGTGCCGCCCATGCACAGTGCGCTCAAGAAGGACGGCAAGGCCCTGTACGAATACGCGCGCGAAGGCGAGACCGTGGCGCGCGAGCCGCGCCGCGTGCGCATCCACGAGATCGAACTGCTCGACATGCGGCTGCAGGGCGAAGCCCCCCAGCTGCGCCTGCGCGTGGTCTGCAGCAAGGGCACCTACATCCGCACGCTCGGCGAAGACATCGGCGAGGCCCTGGGCTGCGGCGGCCACCTGATCGCGCTGCGCCGCGTGGCCACCGGGCCGTTCGGCGTGGCCGACGCCGTCACGCTCGACGCACTTGAGGCGATGGGCGAAGCCGAGCGGCTGGGCGCCCTGAAACCGGTCGAGGCCCTGCTCGAGGGCCATGAACGGATCGCGCTCGACGCCGAGCATGCCGGGCGCTTCCTGAGCGGCGTGCGCCGCCGTGGCGACTGGCCCAACCGCGAGCGCGTGGCCGTCTTCGGCCCTTCGCCCGCCAACCCCACGCCCACCGTCCTGCTGGGCACCGCCCACGTACAGGGCGGCGAACTCATCCCGGGGCGCCTGTTGAGCCCCACCGATATCCAGCAAATCCTCGAAACAGAGGCCCCCGCACCATGA
PROTEIN sequence
Length: 325
MQRQRTRVQRRPVHGVLLLDKPLGLSSNQALQKAKWLLRAEKAGHTGTLDPLATGVLPLCFGAATKFSQLHLDADKTYETTVRLGVRTRTADAEGEVIDTRPVSCSAGQVVEVLDRFMGEIDQVPPMHSALKKDGKALYEYAREGETVAREPRRVRIHEIELLDMRLQGEAPQLRLRVVCSKGTYIRTLGEDIGEALGCGGHLIALRRVATGPFGVADAVTLDALEAMGEAERLGALKPVEALLEGHERIALDAEHAGRFLSGVRRRGDWPNRERVAVFGPSPANPTPTVLLGTAHVQGGELIPGRLLSPTDIQQILETEAPAP*