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scnpilot_p_inoc_scaffold_948_curated

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_948_curated_1
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(459..2231)
DNA (1773bp) protein (591aa)
Putative ssDNA exonuclease, 5'--> 3'-specific {ECO:0000313|EMBL:CDL01249.1}; EC=3.1.-.- {ECO:0000313|EMBL:CDL01249.1};; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
single-stranded DNA-specific exonuclease; K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Putative ssDNA exonuclease, 5'--> 3'-specific n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F712_9PROT
scnpilot_p_inoc_scaffold_948_curated_2
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2238..3221)
DNA (984bp) protein (328aa)
glpX; fructose 1,6-bisphosphatase II (EC:3.1.3.11); K02446 fructose-1,6-bisphosphatase II [EC:3.1.3.11]
Fructose 1,6-bisphosphatase II n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F6V6_9PROT
Fructose-1,6-bisphosphatase {ECO:0000256|PIRNR:PIRNR004532}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
scnpilot_p_inoc_scaffold_948_curated_3
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3247..4539)
DNA (1293bp) protein (431aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579, ECO:0000313|EMBL:CDL01251.1};; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
Homoserine dehydrogenase (HDH) n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F8Z9_9PROT
hom; homoserine dehydrogenase (HDH)
scnpilot_p_inoc_scaffold_948_curated_4
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4539..5768)
DNA (1230bp) protein (410aa)
LL-diaminopimelate aminotransferase {ECO:0000313|EMBL:CDL01252.1}; EC=2.6.1.83 {ECO:0000313|EMBL:CDL01252.1};; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
aminotransferase; K14261 alanine-synthesizing transaminase [EC:2.6.1.-]
LL-diaminopimelate aminotransferase n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F7A6_9PROT
scnpilot_p_inoc_scaffold_948_curated_5
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5891..7579)
DNA (1689bp) protein (563aa)
Methyl-accepting chemotaxis protein n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F8U5_9PROT
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CDL01253.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
methyl-accepting chemotaxis sensory transducer; K03406 methyl-accepting chemotaxis protein
scnpilot_p_inoc_scaffold_948_curated_6
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7730..9406)
DNA (1677bp) protein (559aa)
Methyl-accepting chemotaxis protein n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F8U5_9PROT
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CDL01253.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
putative methyl-accepting chemotaxis protein
scnpilot_p_inoc_scaffold_948_curated_7
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9549..9854)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F719_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CDL01254.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
hypothetical protein
scnpilot_p_inoc_scaffold_948_curated_8
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9851..10942)
DNA (1092bp) protein (364aa)
Putative translation initiation factor IF-2 n=2 Tax=Magnetospirillum gryphiswaldense RepID=V6F6W2_9PROT
Putative translation initiation factor IF-2 {ECO:0000313|EMBL:CDL01255.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
hypothetical protein
scnpilot_p_inoc_scaffold_948_curated_9
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11160..12953
DNA (1794bp) protein (598aa)
Poly-beta-hydroxybutyrate polymerase {ECO:0000313|EMBL:CDL01256.1}; EC=2.3.1.- {ECO:0000313|EMBL:CDL01256.1};; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
Poly(3-hydroxyalkanoate) synthetase; K03821 polyhydroxyalkanoate synthase [EC:2.3.1.-]
Poly-beta-hydroxybutyrate polymerase n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F901_9PROT
scnpilot_p_inoc_scaffold_948_curated_10
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13077..13508
DNA (432bp) protein (144aa)
Putative uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U228_9PROT
Putative uncharacterized protein {ECO:0000313|EMBL:CAM76935.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
scnpilot_p_inoc_scaffold_948_curated_11
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13500..14795)
DNA (1296bp) protein (432aa)
Putative Ribosomal RNA small subunit methyltransferase B {ECO:0000313|EMBL:CDL01227.1}; EC=2.1.1.- {ECO:0000313|EMBL:CDL01227.1};; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
tRNA and rRNA cytosine-C5-methylase; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4U229_9PROT
scnpilot_p_inoc_scaffold_948_curated_12
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14883..15344)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GMP0_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KJS42700.1}; TaxID=1629718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
hypothetical protein
scnpilot_p_inoc_scaffold_948_curated_13
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15458..16798)
DNA (1341bp) protein (447aa)
Ferric reductase n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TWL6_9PROT
Ferric reductase {ECO:0000313|EMBL:CAM75023.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
ferric reductase
scnpilot_p_inoc_scaffold_948_curated_14
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17008..18156
DNA (1149bp) protein (383aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00037E01CC
Uncharacterized protein {ECO:0000313|EMBL:KJS33991.1}; TaxID=1629718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
phosphonate metabolism protein PhnM; K06162 PhnM protein
scnpilot_p_inoc_scaffold_948_curated_15
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18207..19667)
DNA (1461bp) protein (487aa)
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000313|EMBL:CDL01229.1};; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
inosine-5'-monophosphate dehydrogenase; K00088 IMP dehydrogenase [EC:1.1.1.205]
Inosine-5'-monophosphate dehydrogenase n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4U231_9PROT
scnpilot_p_inoc_scaffold_948_curated_16
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19829..20170
DNA (342bp) protein (114aa)
Protein required for attachment to host cells n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U232_9PROT
Protein required for attachment to host cells {ECO:0000313|EMBL:CAM76939.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
protein required for attachment to host cells
scnpilot_p_inoc_scaffold_948_curated_17
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20284..21255
DNA (972bp) protein (324aa)
hypothetical protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI0003799580
Uncharacterized protein {ECO:0000313|EMBL:EKS35142.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
helix-turn-helix, AraC type
scnpilot_p_inoc_scaffold_948_curated_18
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21486..22982
DNA (1497bp) protein (499aa)
Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor n=2 Tax=Rhodospirillum rubrum RepID=Q2RTN3_RHORT
methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor; K03406 methyl-accepting chemotaxis protein
Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor {ECO:0000313|EMBL:ABC22512.1}; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
scnpilot_p_inoc_scaffold_948_curated_19
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23021..23758)
DNA (738bp) protein (246aa)
Ribosomal RNA large subunit methyltransferase E {ECO:0000256|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000256|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; rRNA (uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
23S rRNA methylase; K02427 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
Ribosomal RNA large subunit methyltransferase E n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4U233_9PROT
scnpilot_p_inoc_scaffold_948_curated_20
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23762..24763)
DNA (1002bp) protein (334aa)
Putative exopolyphosphatase {ECO:0000313|EMBL:CDL01232.1}; EC=3.6.1.11 {ECO:0000313|EMBL:CDL01232.1};; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
exopolyphosphatase; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
Putative exopolyphosphatase n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F784_9PROT
scnpilot_p_inoc_scaffold_948_curated_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25167..25433)
DNA (267bp) protein (89aa)
Uncharacterized protein n=18 Tax=Enterobacteriaceae RepID=L2YJW9_ECOLX
Putative prophage protein {ECO:0000313|EMBL:AKA90562.1}; TaxID=941323 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli VR50.;"
hypothetical protein
scnpilot_p_inoc_scaffold_948_curated_22
unknown

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comp(25691..25999)
DNA (309bp) protein (103aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_948_curated_23
unknown

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comp(26019..26342)
DNA (324bp) protein (108aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_948_curated_24
unknown

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comp(26371..26577)
DNA (207bp) protein (69aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_948_curated_25
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26574..26804)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:81 RepID=R5G6G1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY11474.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
hypothetical protein
scnpilot_p_inoc_scaffold_948_curated_26
unknown

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26963..27466
DNA (504bp) protein (168aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_948_curated_27
unknown

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27707..28312
DNA (606bp) protein (202aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_948_curated_28
unknown

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comp(28464..28751)
DNA (288bp) protein (96aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_948_curated_29
unknown

Not on your lists

28835..29083
DNA (249bp) protein (83aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_948_curated_30
Phaeospirillum fulvum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29080..30735
DNA (1656bp) protein (552aa)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI000371099A
Gp33 {ECO:0000313|EMBL:EPY00612.1}; TaxID=1316936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum fulvum MGU-K5.;"
Displaying items 1-30 of 43 in total

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