ggKbase home page

scnpilot_p_inoc_scaffold_29_curated

Search features with annotation key words

Displaying items 91-120 of 330 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_29_curated_91
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

135134..135379
DNA (246bp) protein (82aa)
RNP-1 like RNA-binding protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T2A5_PALPW
rnp-1 like RNA-binding protein
RNP-1 like RNA-binding protein {ECO:0000313|EMBL:ADQ78849.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_29_curated_92
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

135516..136808
DNA (1293bp) protein (431aa)
Uncharacterized protein n=1 Tax=Parabacteroides goldsteinii CL02T12C30 RepID=K5YSX7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN06129.1}; TaxID=999418 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii CL02T12C30.;"
hypothetical protein
scnpilot_p_inoc_scaffold_29_curated_93
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(136805..137449)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Agarivorans albus MKT 106 RepID=R9PH89_AGAAL
hypothetical protein
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_29_curated_94
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

137649..138353
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000372FCEC
hypothetical protein
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_29_curated_95
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

138298..138798
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Porphyromonas macacae RepID=UPI000360E3DF
GtrA family protein
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_29_curated_96
Saccharicrinis fermentans, Saccharicrinis, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(138802..140358)
DNA (1557bp) protein (519aa)
alkyl hydroperoxide reductase; K03387 alkyl hydroperoxide reductase subunit F [EC:1.6.4.-] rbh
Alkyl hydroperoxide reductase, F subunit n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K6ADQ7_9PORP
NADH dehydrogenase {ECO:0000313|EMBL:GAF01491.1}; TaxID=869213 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Saccharicrinis.;" source="Saccharicrinis fermentans DSM 9555 = JCM 21142.;"
scnpilot_p_inoc_scaffold_29_curated_97
Saccharicrinis fermentans, Saccharicrinis, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(140424..140987)
DNA (564bp) protein (188aa)
peroxiredoxin (EC:1.11.1.15)
Peroxiredoxin n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9JRB6_9FIRM
Alkyl hydroperoxide reductase subunit C {ECO:0000313|EMBL:GAF01490.1}; TaxID=869213 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Saccharicrinis.;" source="Saccharicrinis fermentans DSM 9555 = JCM 21142.;"
scnpilot_p_inoc_scaffold_29_curated_98
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

141188..141928
DNA (741bp) protein (247aa)
Acyl-ACP thioesterase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0E2_PALPW
acyL-acp thioesterase
Acyl-ACP thioesterase {ECO:0000313|EMBL:ADQ78301.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_29_curated_99
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

141978..144521
DNA (2544bp) protein (848aa)
Cell division protein FtsK/SpoIIIE n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0Y5_PALPW
cell division protein ftsk/spoiiie; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_29_curated_100
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

144523..145155
DNA (633bp) protein (211aa)
Outer membrane lipoprotein carrier protein LolA n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0Y6_PALPW
outer membrane lipoprotein carrier protein lola
Outer membrane lipoprotein carrier protein LolA {ECO:0000313|EMBL:ADQ78367.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_29_curated_101
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

145178..146119
DNA (942bp) protein (314aa)
thioredoxin reductase (EC:1.8.1.9); K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Thioredoxin reductase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0Y7_PALPW
scnpilot_p_inoc_scaffold_29_curated_102
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(146374..147672)
DNA (1299bp) protein (433aa)
class II aldolase/adducin family protein; K01628 L-fuculose-phosphate aldolase [EC:4.1.2.17]
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00037261D8
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_29_curated_103
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(147790..148689)
DNA (900bp) protein (300aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8J1_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ81035.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_29_curated_104
GWF2_Bacteroidetes_41_31_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(148778..149503)
DNA (726bp) protein (242aa)
Iron-sulfur cluster repair di-iron protein id=2703700 bin=GWF2_Bacteroidetes_41_31 species=Leadbetterella byssophila genus=Leadbetterella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
iron-sulfur cluster repair di-iron protein; K07322 regulator of cell morphogenesis and NO signaling
Tax=GWF2_Bacteroidetes_41_31_curated
scnpilot_p_inoc_scaffold_29_curated_105
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(149677..150585)
DNA (909bp) protein (303aa)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI000303088B
Uncharacterized protein {ECO:0000313|EMBL:KFC59451.1}; TaxID=1492737 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
transcriptional regulator
scnpilot_p_inoc_scaffold_29_curated_106
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(150706..151743)
DNA (1038bp) protein (346aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5J2H0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK00130.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
L-rhamnose-proton symport protein (RhaT).
scnpilot_p_inoc_scaffold_29_curated_107
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(151748..153010)
DNA (1263bp) protein (421aa)
L-rhamnose isomerase (EC:5.3.1.14); K01813 L-rhamnose isomerase [EC:5.3.1.14]
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00037EF946
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_29_curated_108
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(153136..153450)
DNA (315bp) protein (105aa)
l-rhamnose 1-epimerase; K03534 L-rhamnose mutarotase [EC:5.1.3.-]
L-rhamnose mutarotase {ECO:0000256|SAAS:SAAS00048862}; EC=5.1.3.32 {ECO:0000256|SAAS:SAAS00169483};; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
L-rhamnose 1-epimerase n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RWF7_LEAB4
scnpilot_p_inoc_scaffold_29_curated_109
Bacteroides fluxus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

153620..155287
DNA (1668bp) protein (556aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=763034 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fluxus YIT 12057.;"
fhs; formate--tetrahydrofolate ligase; K01938 formate--tetrahydrofolate ligase [EC:6.3.4.3]
Formate--tetrahydrofolate ligase n=1 Tax=Bacteroides fluxus YIT 12057 RepID=F3PV38_9BACE
scnpilot_p_inoc_scaffold_29_curated_110
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(155367..155978)
DNA (612bp) protein (204aa)
Putative oxygen regulatory protein NreC id=3590868 bin=GWC2_Bacteroidetes_46_850 species=Tannerella forsythia genus=Tannerella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
putative oxygen regulatory protein NreC
Tax=GWC2_Bacteroidetes_46_850_curated
scnpilot_p_inoc_scaffold_29_curated_111
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(155985..157874)
DNA (1890bp) protein (630aa)
Uncharacterized protein {ECO:0000313|EMBL:CEA15250.1}; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein id=1934229 bin=GWD2_Bacteroidales_45_23 species=Tannerella forsythia genus=Tannerella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidales_45_23 organism_group=Bacteroidetes
histidine kinase
scnpilot_p_inoc_scaffold_29_curated_112
Bacteroides cellulosilyticus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

158235..161348
DNA (3114bp) protein (1038aa)
Uncharacterized protein n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=E2NDY0_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EEF89886.1}; TaxID=537012 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides cellulosilyticus DSM 14838.;"
hypothetical protein
scnpilot_p_inoc_scaffold_29_curated_113
Prevotella sp. CAG:520, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

161359..165501
DNA (4143bp) protein (1381aa)
Uncharacterized protein n=1 Tax=Prevotella sp. CAG:520 RepID=R6F614_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDB04376.1}; TaxID=1262929 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:520.;"
parallel beta-helix repeat-containing protein
scnpilot_p_inoc_scaffold_29_curated_114
Alloprevotella rava, Alloprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

165509..172819
DNA (7311bp) protein (2437aa)
Uncharacterized protein n=1 Tax=Alloprevotella rava F0323 RepID=G5GAI3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EHG23770.1}; TaxID=679199 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Alloprevotella.;" source="Alloprevotella rava F0323.;"
hypothetical protein
scnpilot_p_inoc_scaffold_29_curated_115
Tannerella sp. CAG:118, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

172961..173437
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Tannerella sp. CAG:118 RepID=R5IIV8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CCY36696.1}; TaxID=1262978 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerella; environmental samples.;" source="Tannerella sp. CAG:118.;"
non-specific DNA-binding protein Dps; K04047 starvation-inducible DNA-binding protein
scnpilot_p_inoc_scaffold_29_curated_116
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

173586..174134
DNA (549bp) protein (183aa)
MerR family transcriptional regulator id=1768547 bin=GWD2_Bacteroidales_45_23 species=Marinilabilia salmonicolor genus=Marinilabilia taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidales_45_23 organism_group=Bacteroidetes
putative transcriptional regulator
Tax=GWC2_Bacteroidetes_46_850_curated
scnpilot_p_inoc_scaffold_29_curated_117
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

174199..176088
DNA (1890bp) protein (630aa)
hypothetical protein MsalJ2_14073 id=3951577 bin=GWC2_Bacteroidetes_46_850 species=Marinilabilia salmonicolor genus=Marinilabilia taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
hypothetical protein
Tax=GWC2_Bacteroidetes_46_850_curated
scnpilot_p_inoc_scaffold_29_curated_118
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(176072..176755)
DNA (684bp) protein (228aa)
Transcriptional regulator, MarR family n=1 Tax=Mariniradius saccharolyticus AK6 RepID=M7XFL8_9BACT
MarR family transcriptional regulator
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_29_curated_119
Odoribacter laneus, Odoribacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

176875..177711
DNA (837bp) protein (279aa)
crtB; phytoene synthase (EC:2.5.1.-)
Putative uncharacterized protein n=1 Tax=Odoribacter laneus YIT 12061 RepID=H1DDM5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EHP50672.1}; TaxID=742817 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Odoribacter.;" source="Odoribacter laneus YIT 12061.;"
scnpilot_p_inoc_scaffold_29_curated_120
Draconibacterium orientale, Draconibacterium, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

177718..178239
DNA (522bp) protein (174aa)
isopentenyl-diphosphate delta-isomerase; K01823 isopentenyl-diphosphate delta-isomerase [EC:5.3.3.2]
Isopentenyl-diphosphate delta-isomerase n=1 Tax=Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) RepID=D5BIR2_ZUNPS
Isopentenyl-diphosphate delta-isomerase {ECO:0000313|EMBL:AHW60316.1}; TaxID=1168034 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prolixibacteraceae; Draconibacterium.;" source="Draconibacterium orientale.;"
Displaying items 91-120 of 330 in total

View Taxonomy