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scnpilot_p_inoc_scaffold_4049_curated_6

Organism: scnpilot_dereplicated_Sphingomonadales_1

near complete RP 50 / 55 MC: 1 BSCG 50 / 51 MC: 1 ASCG 11 / 38
Location: 3535..4914

Top 3 Functional Annotations

Value Algorithm Source
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=1630648 species="Bacteria; Pr similarity UNIPROT
DB: UniProtKB
  • Identity: 87.5
  • Coverage: 456.0
  • Bit_score: 818
  • Evalue 4.20e-234
rimO; ribosomal protein S12 methylthiotransferase; K14441 ribosomal protein S12 methylthiotransferase [EC:2.-.-.-] similarity KEGG
DB: KEGG
  • Identity: 87.7
  • Coverage: 455.0
  • Bit_score: 817
  • Evalue 2.10e-234
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=RIMO_NOVAD similarity UNIREF
DB: UNIREF100
  • Identity: 87.7
  • Coverage: 455.0
  • Bit_score: 817
  • Evalue 6.60e-234
  • rbh

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Taxonomy

Novosphingobium sp. MD-1 → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1380
ATGGCCACAACTATCAAGGAAGCCCCCAAGGTCGGCATGGTCAGCCTCGGCTGCCCCAAGGCATTGGTGGATTCCGAACGCATCCTCACTCGCCTGCGGGCAGACGGCTACACGATGAGCCCGGATTATTCCGGCGCGGACGTGGTGCTGGTCAATACCTGCGGCTTTCTCGATTCCGCCAAGGAGGAAAGCCTTGCCGCCATTGGCGAGGCAATTGCCGAGAATGGCCGCGTGATCGTGACCGGCTGCATGGGCAATGAGGCGGAGCTGATCCGCGCCAAATTCCCTGATGTGCTGGCCGTGACCGGCGCCCATCAATACGAACAGGTGGTGGAAGCCGTCCACGATGCCGCCCCTCCGGGACAGGGGCCCTTCGTGGACCTGATCCCCGCGCGCGCCGATCTGGCCGATGTGAAGCTGACCCCGCGCCATTACAGCTATCTCAAGATTTCCGAAGGCTGCAATCACTCCTGCGCCTTCTGCATCATCCCGCAATTGCGCGGCAAGCTCGTCAGCCGCCGGGTAGACGCCGTGCTGCGCGAGGCGGAAAAGCTGGTGGCCGCCGGCACGAAGGAATTGCTGGTCATCAGCCAGGACACTTCTGCCTATGGCGTGGATGTGCGGCACGAGGAACGCGAGTGGAAGGGTCACCCCGTCCGCACGCATATGACCGACCTTGCCCGCGAACTGGGCCAGCTGCGCACGCCGGAAGGCGATACGCCCTGGGTGCGGCTGCATTACGTCTATCCCTATCCCCATGTGGATGCGGTGATCCCGCTGATGGCGGAAGGGCTGCTGACGCCCTATCTCGACATTCCCTTCCAGCACGCCAGCCCCAATGTTCTGAAAGCCATGAAACGCCCGGCGAATGAGGCCAAGGTGCTGGAACGGCTGAAGGCGTGGCGCACGATCTGCCCGGATATCGCGATCCGCTCCAGCTTCGTGGTCGGTTTCCCCGGCGAGACCGAGGCGGACTTCCAATATCTGCTGGACTGGCTGGACGAAGCCCAACTGGACCGCGTGGGCGCCTTCCGGTTCGAACCGGTCGAAGGCGCGACGGCGAACGACCTGCCCGGCGCGGTGCCGGAAGAGGTCAAGGAAGAACGCTACGCCCGGATCATGGAAAAGACCGAAGCGATCAGCGCCGCCAAGCTGCAGGCGAAGATCGGCCGCACCCTGTCCGTCATCATCGATGAAGTGGGCGAGCCGGACGAGGATGGCGACATCGGCGCCACCGGCCGCAGTCAGGCCGACGCACCGGAGATCGACGGCAGCGTCTATCTGCGCAACGTCCCCGCCAGCCTGAAACCGGGCGATTTCGTACAGGTGGAAGTGGAAGACGCCGACGCCCACGATCTGTTCGGCGCGATTGCCGAGTGA
PROTEIN sequence
Length: 460
MATTIKEAPKVGMVSLGCPKALVDSERILTRLRADGYTMSPDYSGADVVLVNTCGFLDSAKEESLAAIGEAIAENGRVIVTGCMGNEAELIRAKFPDVLAVTGAHQYEQVVEAVHDAAPPGQGPFVDLIPARADLADVKLTPRHYSYLKISEGCNHSCAFCIIPQLRGKLVSRRVDAVLREAEKLVAAGTKELLVISQDTSAYGVDVRHEEREWKGHPVRTHMTDLARELGQLRTPEGDTPWVRLHYVYPYPHVDAVIPLMAEGLLTPYLDIPFQHASPNVLKAMKRPANEAKVLERLKAWRTICPDIAIRSSFVVGFPGETEADFQYLLDWLDEAQLDRVGAFRFEPVEGATANDLPGAVPEEVKEERYARIMEKTEAISAAKLQAKIGRTLSVIIDEVGEPDEDGDIGATGRSQADAPEIDGSVYLRNVPASLKPGDFVQVEVEDADAHDLFGAIAE*