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scnpilot_p_inoc_scaffold_4075_curated_9

Organism: scnpilot_dereplicated_Sphingomonadales_1

near complete RP 50 / 55 MC: 1 BSCG 50 / 51 MC: 1 ASCG 11 / 38
Location: 10804..11457

Top 3 Functional Annotations

Value Algorithm Source
Sigma-24 (FecI-like) n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAY0_NOVAD similarity UNIREF
DB: UNIREF100
  • Identity: 55.9
  • Coverage: 186.0
  • Bit_score: 208
  • Evalue 5.10e-51
RNA polymerase sigma factor {ECO:0000313|EMBL:KHS43418.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 57.5
  • Coverage: 186.0
  • Bit_score: 214
  • Evalue 1.70e-52
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 55.9
  • Coverage: 186.0
  • Bit_score: 208
  • Evalue 1.60e-51

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Taxonomy

Novosphingobium subterraneum → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 654
TTGAGACTTTTCCGGCAAGACGGACTGCGCAACCATGGCGCCCGCACTGCGCGTATCGCGCAGAATGACGATCGCCGCACAGGCCGCGGCGCGGAACCCGATGTCCAGCTCGTGGCGCTTGCGGGCAATGGCGATGTCAGTGCCTTCACCATCATCGTGGAACGCCACAGTGCGGCACTTTACCGGGTGGCCTACCGAATGCTGGGCGATGCAGCCGAAGCCGAGGATGTGGTGCAGGAATGCTTCGCCCGGCTGTGGACGCAAGCCCCCAACTGGTCCGCCCGCGGCGCCGGGCTGGTCGGCTGGCTTCACCGCGTGACCATGAACCTGTGCCTCGACCGGCTACGCAAGCCCACTCACGCAGCCGTTGATCTCCTGCCCGAGGTGCGGGACCATTCTCCGCTCGCCGATAGCTGCATCGAAGGGCGCGAAGCCCGCCTGGCCATCGAACAGGCGCTGGAAGCCCTTCCGCCGCATTATCGGGCCGCCCTGGCACTCAGCTATTTCGAAGGTTTCCCGAATTCGGTAGCTTGCGATGCGATGGAGATGAACCTCAAGGCCTTCGAGTCCCTGCTCGTGCGGGCGCGGCGCCAATTGCGCAGTCTGCTGGAGTCTGGCGAATTCTCCCTCGCCGATCTGGAGATTCTCCCATGA
PROTEIN sequence
Length: 218
LRLFRQDGLRNHGARTARIAQNDDRRTGRGAEPDVQLVALAGNGDVSAFTIIVERHSAALYRVAYRMLGDAAEAEDVVQECFARLWTQAPNWSARGAGLVGWLHRVTMNLCLDRLRKPTHAAVDLLPEVRDHSPLADSCIEGREARLAIEQALEALPPHYRAALALSYFEGFPNSVACDAMEMNLKAFESLLVRARRQLRSLLESGEFSLADLEILP*