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scnpilot_p_inoc_scaffold_2953_curated_7

Organism: scnpilot_dereplicated_Sphingomonadales_1

near complete RP 50 / 55 MC: 1 BSCG 50 / 51 MC: 1 ASCG 11 / 38
Location: comp(5493..6068)

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein Hfq n=1 Tax=Sphingomonas sp. LH128 RepID=J8W339_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 77.9
  • Coverage: 190.0
  • Bit_score: 290
  • Evalue 1.50e-75
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 80.8
  • Coverage: 193.0
  • Bit_score: 301
  • Evalue 9.40e-79
hfq; RNA-binding protein Hfq; K03666 host factor-I protein similarity KEGG
DB: KEGG
  • Identity: 75.4
  • Coverage: 191.0
  • Bit_score: 283
  • Evalue 5.90e-74

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Taxonomy

Kirrobacter mercurialis → Kirrobacter → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 576
ATGACCGGAAGAACCCTGTCGGCACGGCCTAAGCCTGCCCCCGAACCTACAGTTTCCAGTCCCGCCGGCGCCAAGCCGGCGCCTTCTGCCAAGGGTGGGCAGAGCCTGCAGGATGCTTTCCTGAACTTGCTGCGCAAGAACAAGACGCCGGTGACGATGTTCCTCGTCAAGGGCGTGAAGCTTCAGGGTATCGTGACCTGGTTCGACAATTTCTCGATTCTGCTTCGGCGTGATGGGCAGTCGCAGCTCGTCTACAAGCATGCGATCTCCACTATCATGCCCAGCGCGCCCGTTGATGCGGAGCAGTTCGCATCCGGCGTGGATGGCGGCAAGAAGCAGCGTCTTCTGCAGGACGTGTTCCTCGGCAGCGTACGCGATGCAGGTGTCAGCGTCACCATGTTCCTCGTGAACGGCGTAATGCTGCAGGGGCGGATCGCCGCTTATGACCTGTTCTGCATGCTGTTGGAGCGTGAAGGCTTCGTACAGCTTGCCTATAAGCATGCGGTTTCGACCATCCAGCCCGCTTCGCCTGTCGATCTGACCGGCGATTGGGACGGTGAAGGCGAGGGAGACTGA
PROTEIN sequence
Length: 192
MTGRTLSARPKPAPEPTVSSPAGAKPAPSAKGGQSLQDAFLNLLRKNKTPVTMFLVKGVKLQGIVTWFDNFSILLRRDGQSQLVYKHAISTIMPSAPVDAEQFASGVDGGKKQRLLQDVFLGSVRDAGVSVTMFLVNGVMLQGRIAAYDLFCMLLEREGFVQLAYKHAVSTIQPASPVDLTGDWDGEGEGD*