ggKbase home page

SCNpilot_BF_INOC_scaffold_25263_1

Organism: SCNpilot_BF_INOC_UNK

megabin RP 52 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 16 / 38 MC: 15
Location: 347..1024

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PNP3_CHIPD similarity UNIREF
DB: UNIREF100
  • Identity: 43.5
  • Coverage: 191.0
  • Bit_score: 176
  • Evalue 2.20e-41
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 43.5
  • Coverage: 191.0
  • Bit_score: 176
  • Evalue 6.30e-42
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACU64143.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" so similarity UNIPROT
DB: UniProtKB
  • Identity: 43.5
  • Coverage: 191.0
  • Bit_score: 176
  • Evalue 3.10e-41

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Chitinophaga pinensis → Chitinophaga → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 678
ATGGTATTGCTTTTTACTCCAAATACTTTATGTGCTTCCTTTTTATTATTTTTATTTTTCAAAACTAACACTGCATTGCCCGGAAAGGATACATACGATGATGCCCTGCTAATTCAGGAATTGCGGCAAAATAATGCTGAAGCATTTATAGAGCTATATAACAGGTATCATGTACAGATGTATAGCTGGCTGATCCGCTTTGTTAAACTTCCCGAGTTTGCTGAAGATATTATCCAGGAAACTTTTTTAAAGATCTGGGAGATCAGGCATCGTCTCAATCCCGCGCAATCTTTTCCTGCCTACCTGTATCGGATAAGCCGTAATAAAGCCTTTAAATCATTGAAGAAAATTTCACTGGATGAAACGCTCAGGAAACAGGTATTGATCCAGTTTGAAATAGAGTCGGATGATCCCGAAAAAAGATTACGATGGTTGCAATACCAGCAGTTGCTCGAAAATGCAGTCAACCGGCTGCCCGCACAACGGCAAAAAGTATTCAAGCTGTGCAGGCAAAACAATAAGACCTACGACGAAGTGGCAAATGAGCTGGGCATTTCCCGTAATACCGTAAAAGAGCACATGGTCAAAGCCATGCAGGACATCCGGCAATACTTCTACCGGTATGGCGAGATCAGCCTCATCCTGTTGTTTTGCAGCCCGGTGCTGATATTGTATTGA
PROTEIN sequence
Length: 226
MVLLFTPNTLCASFLLFLFFKTNTALPGKDTYDDALLIQELRQNNAEAFIELYNRYHVQMYSWLIRFVKLPEFAEDIIQETFLKIWEIRHRLNPAQSFPAYLYRISRNKAFKSLKKISLDETLRKQVLIQFEIESDDPEKRLRWLQYQQLLENAVNRLPAQRQKVFKLCRQNNKTYDEVANELGISRNTVKEHMVKAMQDIRQYFYRYGEISLILLFCSPVLILY*